Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
MaterialAssemblyGenesGap runsTelomere scan
TK1151 TK1151_GWHBCHF00000000 45224 1917 0/9
OH-1004 OH1004_GCA_047496595.1 40057 131 0/711

Query Interpretation

Input ID
JCVI_TKOH_00231
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 634
crosswalk / blocks / anchors
Best block: JCVI_TKOH_00231

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00231 Chr05 23840-24371060 Chr04 18932311-41076231 mixed High 200 anchors
Chr05 23840-24371060 Chr04 18932311-41076231 JCVI_TKOH_00231 · 634 gene pairs TkA05G049820 | LXL04_019411 | 97.3% | RBH_high_identity_coverage_synteny | Strict TkA05G050240 | LXL04_019413 | 86.0% | non_reciprocal_best_hit | Complex TkA05G050290 | LXL04_019415 | 72.7% | non_reciprocal_best_hit | Complex TkA05G050430 | LXL04_019415 | 92.8% | RBH_sequence_supported | Probable TkA05G050500 | LXL04_019419 | 97.3% | RBH_high_identity_coverage_synteny | Strict TkA05G050660 | LXL04_019422 | 98.3% | RBH_high_identity_coverage_synteny | Strict TkA05G050670 | LXL04_019423 | 90.4% | RBH_sequence_supported | Probable TkA05G050680 | LXL04_019424 | 91.7% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA05G050970 | LXL04_019428 | 81.7% | multi_source_to_OH1004 | Complex TkA05G051030 | LXL04_019426 | 95.8% | RBH_high_identity_coverage_synteny | Strict TkA05G051080 | LXL04_019428 | 98.8% | sequence_supported_annotation_or_model_conflict | Review TkA05G051460 | LXL04_019431 | 99.7% | RBH_high_identity_coverage_synteny | Strict
High Medium Other Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

BlockQuery locationTarget locationOrientationCurrent mapped anchorsConfidenceNote
JCVI_TKOH_00231 Chr05:23840-24371060 Chr04:18932311-41076231 mixed 634 High Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 634 · Showing 401–600 · Page 3/4

TkA05G049820 → LXL04_019411
97.3%
TkA05G050240 → LXL04_019413
86.0%
TkA05G050290 → LXL04_019415
72.7%
TkA05G050430 → LXL04_019415
92.8%
TkA05G050500 → LXL04_019419
97.3%
TkA05G050660 → LXL04_019422
98.3%
TkA05G050670 → LXL04_019423
90.4%
TkA05G050680 → LXL04_019424
91.7%
TkA05G050970 → LXL04_019428
81.7%
TkA05G051030 → LXL04_019426
95.8%
TkA05G051080 → LXL04_019428
98.8%
TkA05G051460 → LXL04_019431
99.7%
TK1151 geneOH-1004 geneBlockIdentityCoverageConfidence
TkA05G049820LXL04_019411JCVI_TKOH_0023197.3100.0 / 100.0Strict
TkA05G050240LXL04_019413JCVI_TKOH_0023186.097.329 / 36.519Complex
TkA05G050290LXL04_019415JCVI_TKOH_0023172.798.308 / 44.562Complex
TkA05G050430LXL04_019415JCVI_TKOH_0023192.8100.0 / 99.675Probable
TkA05G050500LXL04_019419JCVI_TKOH_0023197.398.473 / 81.646Strict
TkA05G050660LXL04_019422JCVI_TKOH_0023198.3100.0 / 100.0Strict
TkA05G050670LXL04_019423JCVI_TKOH_0023190.498.311 / 98.107Probable
TkA05G050680LXL04_019424JCVI_TKOH_0023191.799.115 / 63.684Review
TkA05G050970LXL04_019428JCVI_TKOH_0023181.763.964 / 72.355Complex
TkA05G051030LXL04_019426JCVI_TKOH_0023195.8100.0 / 100.0Strict
TkA05G051080LXL04_019428JCVI_TKOH_0023198.8100.0 / 58.02Review
TkA05G051460LXL04_019431JCVI_TKOH_0023199.7100.0 / 100.0Strict
TkA05G051650LXL04_019434JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G051660LXL04_019435JCVI_TKOH_0023198.6100.0 / 100.0Strict
TkA05G051730LXL04_019436JCVI_TKOH_0023194.6100.0 / 100.0Probable
TkA05G051750LXL04_019437JCVI_TKOH_0023185.0100.0 / 100.0Review
TkA05G051790LXL04_019440JCVI_TKOH_0023199.6100.0 / 100.0Strict
TkA05G051800LXL04_019440JCVI_TKOH_0023198.2100.0 / 39.046Review
TkA05G052080LXL04_019441JCVI_TKOH_0023199.189.431 / 10.496Review
TkA05G052110LXL04_019441JCVI_TKOH_0023198.3100.0 / 22.233Review
TkA05G052280LXL04_019445JCVI_TKOH_0023189.969.291 / 21.394Complex
TkA05G052450LXL04_019448JCVI_TKOH_0023192.0100.0 / 100.0Probable
TkA05G052460LXL04_019449JCVI_TKOH_0023198.897.926 / 100.0Strict
TkA05G053130LXL04_019472JCVI_TKOH_0023151.756.667 / 23.861Complex
TkA05G053140LXL04_019472JCVI_TKOH_0023199.499.43 / 75.705Complex
TkA05G053150LXL04_019473JCVI_TKOH_0023194.5100.0 / 79.389Complex
TkA05G053170LXL04_019474JCVI_TKOH_0023197.9100.0 / 90.733Complex
TkA05G053240LXL04_019460JCVI_TKOH_0023175.598.392 / 35.382Review
TkA05G053260LXL04_019460JCVI_TKOH_0023159.964.734 / 31.034Complex
TkA05G053330LXL04_019461JCVI_TKOH_00231100.061.404 / 61.404Review
TkA05G053340LXL04_019462JCVI_TKOH_0023196.296.354 / 36.853Review
TkA05G053360LXL04_019463JCVI_TKOH_0023190.6100.0 / 60.438Review
TkA05G053610LXL04_019464JCVI_TKOH_0023187.9100.0 / 35.451Complex
TkA05G053940LXL04_019467JCVI_TKOH_0023199.285.135 / 66.667Review
TkA05G054820LXL04_019470JCVI_TKOH_0023180.586.686 / 100.0Complex
TkA05G055070LXL04_019470JCVI_TKOH_0023199.786.479 / 100.0Complex
TkA05G055140LXL04_019472JCVI_TKOH_0023199.499.43 / 75.705Complex
TkA05G055150LXL04_019473JCVI_TKOH_0023194.0100.0 / 79.389Complex
TkA05G055180LXL04_019474JCVI_TKOH_0023196.099.115 / 96.983Complex
TkA05G055190LXL04_019475JCVI_TKOH_0023198.6100.0 / 100.0Strict
TkA05G055200LXL04_019476JCVI_TKOH_0023180.1100.0 / 100.0Review
TkA05G055450LXL04_019478JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G055460LXL04_019479JCVI_TKOH_0023191.9100.0 / 100.0Probable
TkA05G055550LXL04_019481JCVI_TKOH_00231100.094.118 / 52.632Review
TkA05G055580LXL04_019484JCVI_TKOH_0023197.6100.0 / 100.0Complex
TkA05G055780LXL04_019485JCVI_TKOH_0023179.199.383 / 94.089Review
TkA05G055890LXL04_019486JCVI_TKOH_0023198.9100.0 / 100.0Strict
TkA05G055910LXL04_019493JCVI_TKOH_0023194.7100.0 / 100.0Complex
TkA05G055920LXL04_019493JCVI_TKOH_0023193.9100.0 / 58.16Complex
TkA05G055950LXL04_019488JCVI_TKOH_0023193.8100.0 / 100.0Probable
TkA05G056140LXL04_019491JCVI_TKOH_0023197.0100.0 / 92.098Review
TkA05G056170LXL04_019493JCVI_TKOH_0023199.1100.0 / 100.0Review
TkA05G056250LXL04_019493JCVI_TKOH_0023197.9100.0 / 100.0Complex
TkA05G056260LXL04_019494JCVI_TKOH_0023197.3100.0 / 58.793Review
TkA05G056270LXL04_019495JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G056520LXL04_019497JCVI_TKOH_0023199.284.667 / 59.07Review
TkA05G056860LXL04_019500JCVI_TKOH_0023199.7100.0 / 100.0Strict
TkA05G056870LXL04_019501JCVI_TKOH_0023197.9100.0 / 100.0Strict
TkA05G057430LXL04_019511JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G057470LXL04_019512JCVI_TKOH_0023199.197.696 / 59.551Review
TkA05G057480LXL04_019513JCVI_TKOH_00231100.067.333 / 32.013Review
TkA05G057500LXL04_019514JCVI_TKOH_00231100.099.174 / 76.19Complex
TkA05G057570LXL04_019515JCVI_TKOH_0023197.792.991 / 80.242Strict
TkA05G057740LXL04_019518JCVI_TKOH_0023198.8100.0 / 100.0Strict
TkA05G057890LXL04_019520JCVI_TKOH_0023199.8100.0 / 100.0Strict
TkA05G057900LXL04_019521JCVI_TKOH_0023199.7100.0 / 97.598Strict
TkA05G057980LXL04_019522JCVI_TKOH_00231100.091.039 / 84.95Strict
TkA05G057990LXL04_019524JCVI_TKOH_0023195.3100.0 / 100.0Strict
TkA05G058000LXL04_019525JCVI_TKOH_0023197.329.918 / 7.841Complex
TkA05G058010LXL04_019525JCVI_TKOH_0023152.083.07 / 62.836Complex
TkA05G058030LXL04_019529JCVI_TKOH_0023198.4100.0 / 100.0Strict
TkA05G058150LXL04_019530JCVI_TKOH_0023199.7100.0 / 84.843Complex
TkA05G058170LXL04_019531JCVI_TKOH_0023197.0100.0 / 100.0Complex
TkA05G058200LXL04_019530JCVI_TKOH_0023198.8100.0 / 84.843Complex
TkA05G058210LXL04_019531JCVI_TKOH_0023199.0100.0 / 100.0Complex
TkA05G058970LXL04_019533JCVI_TKOH_0023198.799.375 / 63.214Complex
TkA05G058990LXL04_019534JCVI_TKOH_0023197.1100.0 / 100.0Complex
TkA05G059170LXL04_019535JCVI_TKOH_0023199.2100.0 / 43.911Review
TkA05G059600LXL04_019538JCVI_TKOH_0023198.8100.0 / 98.235Review
TkA05G059690LXL04_019539JCVI_TKOH_00231100.0100.0 / 100.0Review
TkA05G059860LXL04_019539JCVI_TKOH_0023133.0100.0 / 93.605Complex
TkA05G059910LXL04_019540JCVI_TKOH_0023198.0100.0 / 100.0Complex
TkA05G060520LXL04_019543JCVI_TKOH_0023199.3100.0 / 100.0Review
TkA05G060540LXL04_019543JCVI_TKOH_0023199.489.174 / 43.113Review
TkA05G060740LXL04_019533JCVI_TKOH_0023196.7100.0 / 100.0Complex
TkA05G060780LXL04_019534JCVI_TKOH_00231100.0100.0 / 100.0Complex
TkA05G060810LXL04_019535JCVI_TKOH_0023195.2100.0 / 100.0Strict
TkA05G061060LXL04_019538JCVI_TKOH_0023199.4100.0 / 98.235Review
TkA05G061120LXL04_019539JCVI_TKOH_0023199.4100.0 / 100.0Review
TkA05G061280LXL04_019540JCVI_TKOH_00231100.0100.0 / 100.0Complex
TkA05G061670LXL04_019551JCVI_TKOH_0023182.4100.0 / 89.922Complex
TkA05G061680LXL04_019552JCVI_TKOH_0023199.4100.0 / 100.0Review
TkA05G061780LXL04_019554JCVI_TKOH_0023198.7100.0 / 100.0Complex
TkA05G062120LXL04_019557JCVI_TKOH_0023199.4100.0 / 100.0Complex
TkA05G062190LXL04_019558JCVI_TKOH_00231100.098.089 / 44.638Review
TkA05G062350LXL04_019562JCVI_TKOH_00231100.0100.0 / 61.141Complex
TkA05G062510LXL04_019549JCVI_TKOH_0023198.4100.0 / 100.0Strict
TkA05G062530LXL04_019550JCVI_TKOH_0023199.8100.0 / 100.0Strict
TkA05G062550LXL04_019551JCVI_TKOH_0023196.599.307 / 66.357Complex
TkA05G062570LXL04_019552JCVI_TKOH_0023198.7100.0 / 100.0Review
TkA05G062620LXL04_019554JCVI_TKOH_0023198.4100.0 / 100.0Complex
TkA05G062800LXL04_019557JCVI_TKOH_0023199.4100.0 / 95.362Complex
TkA05G062930LXL04_019558JCVI_TKOH_00231100.098.089 / 44.638Review
TkA05G063080LXL04_019562JCVI_TKOH_00231100.0100.0 / 100.0Complex
TkA05G063830LXL04_019564JCVI_TKOH_00231100.0100.0 / 100.0Review
TkA05G063920LXL04_019565JCVI_TKOH_0023199.7100.0 / 97.775Strict
TkA05G063930LXL04_019567JCVI_TKOH_0023172.1100.0 / 100.0Complex
TkA05G063940LXL04_019570JCVI_TKOH_0023199.3100.0 / 100.0Strict
TkA05G064100LXL04_019572JCVI_TKOH_0023195.1100.0 / 80.627Complex
TkA05G064570LXL04_019575JCVI_TKOH_0023198.8100.0 / 100.0Complex
TkA05G064590LXL04_019576JCVI_TKOH_0023198.799.164 / 91.209Strict
TkA05G064630LXL04_019577JCVI_TKOH_0023199.896.435 / 96.263Complex
TkA05G065250LXL04_019582JCVI_TKOH_0023199.589.831 / 32.073Review
TkA05G065390LXL04_019584JCVI_TKOH_0023199.8100.0 / 100.0Strict
TkA05G065530LXL04_019587JCVI_TKOH_0023198.8100.0 / 100.0Strict
TkA05G065610LXL04_019589JCVI_TKOH_00231100.0100.0 / 100.0Review
TkA05G065820LXL04_019591JCVI_TKOH_0023198.897.424 / 100.0Strict
TkA05G065830LXL04_019592JCVI_TKOH_0023198.3100.0 / 100.0Strict
TkA05G065910LXL04_019584JCVI_TKOH_00231100.098.587 / 43.662Review
TkA05G065940LXL04_019582JCVI_TKOH_0023198.689.831 / 32.073Review
TkA05G066320LXL04_019580JCVI_TKOH_0023195.191.964 / 79.231Probable
TkA05G066520LXL04_019577JCVI_TKOH_00231100.096.435 / 96.263Complex
TkA05G066530LXL04_019576JCVI_TKOH_00231100.074.236 / 18.681Complex
TkA05G066540LXL04_019576JCVI_TKOH_00231100.037.596 / 16.154Complex
TkA05G066590LXL04_019575JCVI_TKOH_0023197.6100.0 / 100.0Complex
TkA05G067070LXL04_019572JCVI_TKOH_0023195.1100.0 / 80.627Complex
TkA05G067300LXL04_019594JCVI_TKOH_0023156.292.791 / 62.92Complex
TkA05G067370LXL04_019596JCVI_TKOH_0023197.283.483 / 97.859Complex
TkA05G067410LXL04_019598JCVI_TKOH_0023197.2100.0 / 61.628Complex
TkA05G067490LXL04_019600JCVI_TKOH_0023191.6100.0 / 100.0Complex
TkA05G067530LXL04_019601JCVI_TKOH_0023181.9100.0 / 100.0Review
TkA05G067770LXL04_019602JCVI_TKOH_0023198.9100.0 / 100.0Strict
TkA05G067910LXL04_019605JCVI_TKOH_0023198.492.922 / 92.922Strict
TkA05G068310LXL04_019607JCVI_TKOH_0023199.199.567 / 94.262Strict
TkA05G068330LXL04_019608JCVI_TKOH_0023199.3100.0 / 90.381Complex
TkA05G068480LXL04_019610JCVI_TKOH_0023199.7100.0 / 90.96Complex
TkA05G068720LXL04_019614JCVI_TKOH_0023198.0100.0 / 53.684Review
TkA05G068990LXL04_019615JCVI_TKOH_0023198.9100.0 / 100.0Strict
TkA05G069250LXL04_019616JCVI_TKOH_00231100.0100.0 / 91.989Review
TkA05G069290LXL04_019620JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G069300LXL04_019621JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G069400LXL04_019624JCVI_TKOH_0023191.579.851 / 92.857Probable
TkA05G069420LXL04_019625JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G069430LXL04_019626JCVI_TKOH_00231100.0100.0 / 100.0Review
TkA05G069450LXL04_019628JCVI_TKOH_0023199.5100.0 / 100.0Complex
TkA05G069490LXL04_019630JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G069750LXL04_019631JCVI_TKOH_0023198.192.982 / 100.0Strict
TkA05G070120LXL04_019633JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G070160LXL04_019634JCVI_TKOH_0023195.1100.0 / 100.0Strict
TkA05G070270LXL04_019635JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G070280LXL04_019636JCVI_TKOH_0023197.1100.0 / 100.0Strict
TkA05G070510LXL04_019637JCVI_TKOH_0023194.697.727 / 11.015Complex
TkA05G070690LXL04_019637JCVI_TKOH_0023172.599.62 / 61.274Review
TkA05G070870LXL04_019646JCVI_TKOH_0023183.599.086 / 98.141Complex
TkA05G070880LXL04_019647JCVI_TKOH_0023182.9100.0 / 34.808Complex
TkA05G070900LXL04_019647JCVI_TKOH_0023189.578.981 / 27.241Complex
TkA05G071280LXL04_019650JCVI_TKOH_00231100.0100.0 / 100.0Review
TkA05G071340LXL04_019651JCVI_TKOH_0023197.262.445 / 51.254Review
TkA05G071820LXL04_019656JCVI_TKOH_0023198.9100.0 / 94.881Complex
TkA05G071860LXL04_019658JCVI_TKOH_0023192.8100.0 / 66.914Review
TkA05G072180LXL04_019660JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G072880LXL04_019664JCVI_TKOH_0023199.892.542 / 98.201Strict
TkA05G073950LXL04_019668JCVI_TKOH_0023190.386.567 / 79.07Probable
TkA05G074020LXL04_019669JCVI_TKOH_0023196.896.903 / 100.0Strict
TkA05G074030LXL04_019671JCVI_TKOH_0023192.088.387 / 71.503Probable
TkA05G074040LXL04_019672JCVI_TKOH_00231100.025.0 / 14.362Complex
TkA05G074140LXL04_019673JCVI_TKOH_0023198.5100.0 / 100.0Strict
TkA05G074180LXL04_019675JCVI_TKOH_00231100.093.514 / 27.814Review
TkA05G074190LXL04_019675JCVI_TKOH_0023192.497.175 / 27.17Complex
TkA05G074200LXL04_019675JCVI_TKOH_0023198.389.899 / 28.617Review
TkA05G074490LXL04_019676JCVI_TKOH_0023181.995.146 / 48.133Review
TkA05G074500LXL04_019677JCVI_TKOH_00231100.0100.0 / 48.831Review
TkA05G074510LXL04_019677JCVI_TKOH_0023191.193.182 / 35.065Complex
TkA05G074650LXL04_019678JCVI_TKOH_0023192.992.569 / 41.719Review
TkA05G074660LXL04_019679JCVI_TKOH_0023197.694.828 / 99.698Review
TkA05G074770LXL04_019680JCVI_TKOH_0023199.4100.0 / 100.0Complex
TkA05G074810LXL04_019681JCVI_TKOH_0023192.4100.0 / 43.99Review
TkA05G075120LXL04_019683JCVI_TKOH_0023197.5100.0 / 85.507Strict
TkA05G075130LXL04_019684JCVI_TKOH_0023194.1100.0 / 100.0Probable
TkA05G075170LXL04_019688JCVI_TKOH_0023198.884.021 / 99.088Complex
TkA05G075180LXL04_019689JCVI_TKOH_00231100.0100.0 / 100.0Review
TkA05G075220LXL04_019690JCVI_TKOH_0023197.699.457 / 75.62Complex
TkA05G075600LXL04_019688JCVI_TKOH_0023199.484.021 / 99.088Complex
TkA05G075610LXL04_019689JCVI_TKOH_0023197.7100.0 / 100.0Review
TkA05G075800LXL04_019690JCVI_TKOH_0023198.2100.0 / 100.0Complex
TkA05G075990LXL04_019693JCVI_TKOH_0023197.799.814 / 57.969Review
TkA05G076020LXL04_019694JCVI_TKOH_0023198.499.191 / 99.421Strict
TkA05G076320LXL04_019695JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G076640LXL04_019697JCVI_TKOH_0023199.2100.0 / 100.0Strict
TkA05G077490LXL04_019704JCVI_TKOH_0023167.086.792 / 93.069Complex
TkA05G078980LXL04_019712JCVI_TKOH_0023197.054.472 / 68.367Review
TkA05G079780LXL04_019716JCVI_TKOH_0023189.881.481 / 89.796Complex
TkA05G080040LXL04_019719JCVI_TKOH_0023197.256.386 / 89.604Review
TkA05G080050LXL04_019720JCVI_TKOH_0023178.977.612 / 98.446Complex
TkA05G080640LXL04_019727JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G081920LXL04_019732JCVI_TKOH_00231100.0100.0 / 100.0Strict
TkA05G081960LXL04_019733JCVI_TKOH_0023199.1100.0 / 100.0Strict
TkA05G082010LXL04_019736JCVI_TKOH_0023198.7100.0 / 100.0Strict
TkA05G082040LXL04_019737JCVI_TKOH_0023199.0100.0 / 84.89Strict
TkA05G082100LXL04_019739JCVI_TKOH_0023199.4100.0 / 100.0Review