Gene Card
Gene overview
cDNA / CDS / Protein Sequences
3201 bp · LXL04_019488|LXL04_019488|OH1004|cDNA
ATGGTGGTCAGAATTCTAGGGTTGACTCGCGCGGAGGAGGAGTCGCCGAGGGAGATCACACGCAATAATCTATTGAGTGAGAGCGGTGGAGAGAGTGGGTGGTTGATTAGATTCTTCGATTCTGCTTTCTTCTGTGAGTGGATTGCAGTTAGTTATCTCTACAAACATGATCACCCTGGGGTTCGGGATTACCTCTGCAACAGGATGTACACTCTCCCATTATCTGGCATCGAAAGCTACTTATTTCAGATATGTTATAT...
3201 bp · LXL04_019488|LXL04_019488|OH1004|CDS
ATGGTGGTCAGAATTCTAGGGTTGACTCGCGCGGAGGAGGAGTCGCCGAGGGAGATCACACGCAATAATCTATTGAGTGAGAGCGGTGGAGAGAGTGGGTGGTTGATTAGATTCTTCGATTCTGCTTTCTTCTGTGAGTGGATTGCAGTTAGTTATCTCTACAAACATGATCACCCTGGGGTTCGGGATTACCTCTGCAACAGGATGTACACTCTCCCATTATCTGGCATCGAAAGCTACTTATTTCAGATATGTTATAT...
Protein
Download Protein FASTA1066 aa · LXL04_019488|LXL04_019488|OH1004|PROTEIN
MVVRILGLTRAEEESPREITRNNLLSESGGESGWLIRFFDSAFFCEWIAVSYLYKHDHPGVRDYLCNRMYTLPLSGIESYLFQICYMLVHKPSPSLDKFVIDICSKSLKIALKVQWFLMGELEDSDDNEGISRIQEKCQIAATIMGEWTPLIKPHTEPTINIGKNQVLTRLLSSKQRLLSLATSPPPSKSFSFTPGANPVQDEGSSKASPDDNTLFKKIIPSPKVRNALLFRKSAEKDDEEHDKDGFFKRLLRDGKDEDE...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_019488 |
|---|---|
| TK1151 ID | TkA05G055950 |
| OH-1004 ID | LXL04_019488 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 93.800 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_019488 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:32376215-32380865 (-) | |||||||||
| Description | Similar to PI4KB1: Phosphatidylinositol 4-kinase beta 1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006661 phosphatidylinositol biosynthetic process Biological Process GO:0009860 pollen tube growth Biological Process GO:0043327 chemotaxis to cAMP Biological Process GO:0044782 cilium organization Biological Process GO:0046854 phosphatidylinositol phosphate biosynthetic process Biological Process GO:0048015 phosphatidylinositol-mediated signaling Biological Process GO:0048768 root hair cell tip growth Biological Process GO:0060271 cilium assembly Biological Process GO:0140459 response to Gram-positive bacterium Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005741 mitochondrial outer membrane Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT5G09350 ath:AT5G64070 ddi:DDB_G0288485 dre:563201 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF21245.4PI4KB-PIK1_PIK48-118 aaPF00454.34PI3_PI4_kinase821-1012 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_019488 | PF21245.4 | PI4KB-PIK1_PIK | 48 | 118 | 2.4e-12 | 47.5 |
| LXL04_019488 | PF00454.34 | PI3_PI4_kinase | 821 | 1012 | 2.8e-30 | 106.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.