Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00090

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 486

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00090

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00090 Chr02 99594883-115215777 Chr03 42079865-58122381 mixed High 86 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00090`	Chr02:99594883-115215777	Chr03:42079865-58122381	mixed	486	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 486 · Showing 401–486 · Page 3/3

Previous Download All Anchors TSV

TkA02G446760 → LXL04_014225

99.5%

TkA02G446770 → LXL04_014224

99.1%

TkA02G446790 → LXL04_014223

100.0%

TkA02G446800 → LXL04_014223

97.3%

TkA02G446830 → LXL04_014222

99.2%

TkA02G446860 → LXL04_014221

99.8%

TkA02G446900 → LXL04_014220

99.6%

TkA02G447090 → LXL04_014216

95.2%

TkA02G447190 → LXL04_014213

66.0%

TkA02G447450 → LXL04_014210

96.9%

TkA02G447640 → LXL04_014208

72.7%

TkA02G447690 → LXL04_014207

100.0%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA02G446760`	`LXL04_014225`	`JCVI_TKOH_00090`	99.5	99.497 / 31.28	Review
`TkA02G446770`	`LXL04_014224`	`JCVI_TKOH_00090`	99.1	89.844 / 17.868	Review
`TkA02G446790`	`LXL04_014223`	`JCVI_TKOH_00090`	100.0	100.0 / 19.473	Review
`TkA02G446800`	`LXL04_014223`	`JCVI_TKOH_00090`	97.3	92.519 / 54.319	Review
`TkA02G446830`	`LXL04_014222`	`JCVI_TKOH_00090`	99.2	100.0 / 94.052	Strict
`TkA02G446860`	`LXL04_014221`	`JCVI_TKOH_00090`	99.8	91.002 / 32.27	Review
`TkA02G446900`	`LXL04_014220`	`JCVI_TKOH_00090`	99.6	98.996 / 81.353	Strict
`TkA02G447090`	`LXL04_014216`	`JCVI_TKOH_00090`	95.2	100.0 / 84.146	Strict
`TkA02G447190`	`LXL04_014213`	`JCVI_TKOH_00090`	66.0	100.0 / 100.0	Review
`TkA02G447450`	`LXL04_014210`	`JCVI_TKOH_00090`	96.9	78.689 / 18.462	Complex
`TkA02G447640`	`LXL04_014208`	`JCVI_TKOH_00090`	72.7	81.87 / 81.109	Review
`TkA02G447690`	`LXL04_014207`	`JCVI_TKOH_00090`	100.0	100.0 / 80.11	Strict
`TkA02G447720`	`LXL04_014204`	`JCVI_TKOH_00090`	53.2	90.678 / 18.996	Complex
`TkA02G447730`	`LXL04_014204`	`JCVI_TKOH_00090`	72.2	100.0 / 31.362	Complex
`TkA02G447740`	`LXL04_014203`	`JCVI_TKOH_00090`	100.0	100.0 / 100.0	Review
`TkA02G447750`	`LXL04_014202`	`JCVI_TKOH_00090`	99.2	100.0 / 100.0	Strict
`TkA02G447780`	`LXL04_014201`	`JCVI_TKOH_00090`	100.0	97.348 / 75.271	Probable
`TkA02G447790`	`LXL04_014200`	`JCVI_TKOH_00090`	100.0	100.0 / 97.895	Strict
`TkA02G448260`	`LXL04_014198`	`JCVI_TKOH_00090`	84.7	99.802 / 87.993	Review
`TkA02G448350`	`LXL04_014197`	`JCVI_TKOH_00090`	95.1	95.639 / 55.135	Review
`TkA02G448420`	`LXL04_014196`	`JCVI_TKOH_00090`	81.5	77.907 / 27.542	Review
`TkA02G448470`	`LXL04_014195`	`JCVI_TKOH_00090`	99.7	100.0 / 100.0	Strict
`TkA02G448490`	`LXL04_014194`	`JCVI_TKOH_00090`	99.5	100.0 / 100.0	Strict
`TkA02G448500`	`LXL04_014190`	`JCVI_TKOH_00090`	96.7	100.0 / 91.899	Complex
`TkA02G448550`	`LXL04_014192`	`JCVI_TKOH_00090`	97.1	61.607 / 42.331	Review
`TkA02G448560`	`LXL04_014190`	`JCVI_TKOH_00090`	99.7	100.0 / 91.899	Complex
`TkA02G448590`	`LXL04_014188`	`JCVI_TKOH_00090`	100.0	100.0 / 100.0	Strict
`TkA02G448660`	`LXL04_014186`	`JCVI_TKOH_00090`	97.7	100.0 / 100.0	Strict
`TkA02G448670`	`LXL04_014185`	`JCVI_TKOH_00090`	96.3	100.0 / 96.627	Strict
`TkA02G448680`	`LXL04_014184`	`JCVI_TKOH_00090`	97.1	100.0 / 100.0	Strict
`TkA02G448690`	`LXL04_014183`	`JCVI_TKOH_00090`	100.0	100.0 / 100.0	Strict
`TkA02G448720`	`LXL04_014182`	`JCVI_TKOH_00090`	98.5	100.0 / 100.0	Strict
`TkA02G448800`	`LXL04_014179`	`JCVI_TKOH_00090`	98.2	98.545 / 92.888	Strict
`TkA02G448820`	`LXL04_014178`	`JCVI_TKOH_00090`	100.0	100.0 / 100.0	Strict
`TkA02G448890`	`LXL04_014175`	`JCVI_TKOH_00090`	87.3	100.0 / 100.0	Complex
`TkA02G449030`	`LXL04_014173`	`JCVI_TKOH_00090`	100.0	100.0 / 100.0	Strict
`TkA02G449220`	`LXL04_014170`	`JCVI_TKOH_00090`	98.8	100.0 / 100.0	Strict
`TkA02G449230`	`LXL04_014169`	`JCVI_TKOH_00090`	99.7	100.0 / 100.0	Strict
`TkA02G449280`	`LXL04_014167`	`JCVI_TKOH_00090`	99.5	100.0 / 100.0	Strict
`TkA02G449290`	`LXL04_014166`	`JCVI_TKOH_00090`	99.7	100.0 / 100.0	Strict
`TkA02G449300`	`LXL04_014163`	`JCVI_TKOH_00090`	99.3	100.0 / 100.0	Strict
`TkA02G449380`	`LXL04_014162`	`JCVI_TKOH_00090`	100.0	100.0 / 100.0	Strict
`TkA02G449390`	`LXL04_014161`	`JCVI_TKOH_00090`	93.9	100.0 / 87.767	Complex
`TkA02G449560`	`LXL04_014160`	`JCVI_TKOH_00090`	100.0	100.0 / 100.0	Complex
`TkA02G449570`	`LXL04_014159`	`JCVI_TKOH_00090`	96.5	100.0 / 100.0	Strict
`TkA02G449720`	`LXL04_014157`	`JCVI_TKOH_00090`	100.0	100.0 / 100.0	Complex
`TkA02G449810`	`LXL04_014156`	`JCVI_TKOH_00090`	97.5	100.0 / 89.333	Strict
`TkA02G449940`	`LXL04_014154`	`JCVI_TKOH_00090`	99.7	99.827 / 14.925	Review
`TkA02G450010`	`LXL04_014153`	`JCVI_TKOH_00090`	61.8	100.0 / 66.497	Review
`TkA02G450140`	`LXL04_014152`	`JCVI_TKOH_00090`	99.6	54.681 / 77.41	Review
`TkA02G450150`	`LXL04_014150`	`JCVI_TKOH_00090`	100.0	100.0 / 100.0	Review
`TkA02G450410`	`LXL04_014147`	`JCVI_TKOH_00090`	98.7	100.0 / 100.0	Strict
`TkA02G450880`	`LXL04_014146`	`JCVI_TKOH_00090`	100.0	100.0 / 100.0	Strict
`TkA02G450900`	`LXL04_014145`	`JCVI_TKOH_00090`	89.4	100.0 / 95.184	Review
`TkA02G450980`	`LXL04_014143`	`JCVI_TKOH_00090`	100.0	100.0 / 100.0	Complex
`TkA02G451110`	`LXL04_014142`	`JCVI_TKOH_00090`	94.7	100.0 / 100.0	Complex
`TkA02G451120`	`LXL04_014141`	`JCVI_TKOH_00090`	100.0	100.0 / 100.0	Review
`TkA02G451130`	`LXL04_014140`	`JCVI_TKOH_00090`	99.6	100.0 / 100.0	Strict
`TkA02G451140`	`LXL04_014139`	`JCVI_TKOH_00090`	98.5	100.0 / 100.0	Strict
`TkA02G451270`	`LXL04_014137`	`JCVI_TKOH_00090`	99.7	100.0 / 100.0	Complex
`TkA02G451310`	`LXL04_014136`	`JCVI_TKOH_00090`	100.0	91.667 / 37.643	Review
`TkA02G451420`	`LXL04_014133`	`JCVI_TKOH_00090`	100.0	100.0 / 100.0	Complex
`TkA02G451440`	`LXL04_014132`	`JCVI_TKOH_00090`	95.3	95.522 / 29.448	Review
`TkA02G451450`	`LXL04_014132`	`JCVI_TKOH_00090`	99.5	95.814 / 31.595	Review
`TkA02G451460`	`LXL04_014131`	`JCVI_TKOH_00090`	99.5	64.975 / 57.658	Complex
`TkA02G451500`	`LXL04_014128`	`JCVI_TKOH_00090`	94.6	99.745 / 88.987	Probable
`TkA02G451520`	`LXL04_014127`	`JCVI_TKOH_00090`	94.4	93.913 / 29.888	Review
`TkA02G451830`	`LXL04_014126`	`JCVI_TKOH_00090`	100.0	100.0 / 100.0	Strict
`TkA02G451840`	`LXL04_014123`	`JCVI_TKOH_00090`	84.3	100.0 / 53.804	Complex
`TkA02G451860`	`LXL04_014122`	`JCVI_TKOH_00090`	98.0	82.468 / 91.367	Strict
`TkA02G451870`	`LXL04_014120`	`JCVI_TKOH_00090`	98.1	100.0 / 88.873	Strict
`TkA02G451880`	`LXL04_014119`	`JCVI_TKOH_00090`	99.6	100.0 / 100.0	Strict
`TkA02G451940`	`LXL04_014117`	`JCVI_TKOH_00090`	99.6	100.0 / 94.273	Complex
`TkA02G451960`	`LXL04_014116`	`JCVI_TKOH_00090`	99.7	80.556 / 71.429	Probable
`TkA02G451970`	`LXL04_014115`	`JCVI_TKOH_00090`	99.8	100.0 / 100.0	Review
`TkA02G451980`	`LXL04_014113`	`JCVI_TKOH_00090`	98.0	93.827 / 66.887	Review
`TkA02G452030`	`LXL04_014112`	`JCVI_TKOH_00090`	99.8	100.0 / 100.0	Complex
`TkA02G452060`	`LXL04_014111`	`JCVI_TKOH_00090`	100.0	100.0 / 100.0	Strict
`TkA02G452480`	`LXL04_014110`	`JCVI_TKOH_00090`	96.4	100.0 / 100.0	Complex
`TkA02G452530`	`LXL04_014109`	`JCVI_TKOH_00090`	100.0	100.0 / 100.0	Strict
`TkA02G452550`	`LXL04_014108`	`JCVI_TKOH_00090`	100.0	100.0 / 74.074	Probable
`TkA02G452560`	`LXL04_014107`	`JCVI_TKOH_00090`	99.3	100.0 / 100.0	Complex
`TkA02G452600`	`LXL04_014105`	`JCVI_TKOH_00090`	99.7	100.0 / 100.0	Strict
`TkA02G452690`	`LXL04_014104`	`JCVI_TKOH_00090`	100.0	100.0 / 100.0	Strict
`TkA02G452710`	`LXL04_014103`	`JCVI_TKOH_00090`	100.0	98.214 / 49.327	Review
`TkA02G452730`	`LXL04_014102`	`JCVI_TKOH_00090`	98.6	100.0 / 100.0	Complex