Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00143

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 256

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00143

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00143 Chr03 80926408-93928728 Chr02 97361592-109750028 mixed High 56 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00143`	Chr03:80926408-93928728	Chr02:97361592-109750028	mixed	256	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 256 · Showing 201–256 · Page 2/2

Previous Download All Anchors TSV

TkA03G370570 → LXL04_008458

100.0%

TkA03G370740 → LXL04_008457

90.5%

TkA03G371000 → LXL04_008454

54.8%

TkA03G371290 → LXL04_008453

100.0%

TkA03G371340 → LXL04_008452

98.5%

TkA03G371400 → LXL04_008451

97.5%

TkA03G371460 → LXL04_008449

98.6%

TkA03G371610 → LXL04_008445

92.7%

TkA03G371870 → LXL04_008442

97.8%

TkA03G371950 → LXL04_008440

100.0%

TkA03G371980 → LXL04_008438

95.4%

TkA03G371990 → LXL04_008436

100.0%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA03G370570`	`LXL04_008458`	`JCVI_TKOH_00143`	100.0	100.0 / 100.0	Strict
`TkA03G370740`	`LXL04_008457`	`JCVI_TKOH_00143`	90.5	58.333 / 42.568	Review
`TkA03G371000`	`LXL04_008454`	`JCVI_TKOH_00143`	54.8	38.389 / 18.341	Complex
`TkA03G371290`	`LXL04_008453`	`JCVI_TKOH_00143`	100.0	100.0 / 42.339	Review
`TkA03G371340`	`LXL04_008452`	`JCVI_TKOH_00143`	98.5	100.0 / 100.0	Strict
`TkA03G371400`	`LXL04_008451`	`JCVI_TKOH_00143`	97.5	93.19 / 54.175	Review
`TkA03G371460`	`LXL04_008449`	`JCVI_TKOH_00143`	98.6	77.095 / 86.52	Probable
`TkA03G371610`	`LXL04_008445`	`JCVI_TKOH_00143`	92.7	100.0 / 100.0	Probable
`TkA03G371870`	`LXL04_008442`	`JCVI_TKOH_00143`	97.8	100.0 / 100.0	Strict
`TkA03G371950`	`LXL04_008440`	`JCVI_TKOH_00143`	100.0	100.0 / 100.0	Complex
`TkA03G371980`	`LXL04_008438`	`JCVI_TKOH_00143`	95.4	100.0 / 99.769	Strict
`TkA03G371990`	`LXL04_008436`	`JCVI_TKOH_00143`	100.0	100.0 / 100.0	Strict
`TkA03G372000`	`LXL04_008435`	`JCVI_TKOH_00143`	100.0	100.0 / 100.0	Strict
`TkA03G372580`	`LXL04_008432`	`JCVI_TKOH_00143`	87.0	89.305 / 82.143	Review
`TkA03G372970`	`LXL04_008430`	`JCVI_TKOH_00143`	93.7	100.0 / 100.0	Probable
`TkA03G373000`	`LXL04_008425`	`JCVI_TKOH_00143`	82.2	100.0 / 80.928	Complex
`TkA03G373070`	`LXL04_008425`	`JCVI_TKOH_00143`	89.2	100.0 / 100.0	Complex
`TkA03G373120`	`LXL04_008424`	`JCVI_TKOH_00143`	89.1	100.0 / 100.0	Complex
`TkA03G373410`	`LXL04_008422`	`JCVI_TKOH_00143`	99.4	100.0 / 100.0	Review
`TkA03G373570`	`LXL04_008422`	`JCVI_TKOH_00143`	88.4	100.0 / 100.0	Complex
`TkA03G373830`	`LXL04_008420`	`JCVI_TKOH_00143`	96.5	94.821 / 60.175	Complex
`TkA03G374180`	`LXL04_008417`	`JCVI_TKOH_00143`	84.1	100.0 / 80.513	Complex
`TkA03G374720`	`LXL04_008411`	`JCVI_TKOH_00143`	100.0	94.712 / 32.19	Review
`TkA03G375150`	`LXL04_008417`	`JCVI_TKOH_00143`	82.2	100.0 / 80.513	Complex
`TkA03G376140`	`LXL04_008409`	`JCVI_TKOH_00143`	99.9	100.0 / 100.0	Strict
`TkA03G376230`	`LXL04_008402`	`JCVI_TKOH_00143`	99.5	100.0 / 100.0	Strict
`TkA03G376290`	`LXL04_008401`	`JCVI_TKOH_00143`	97.0	81.373 / 77.358	Probable
`TkA03G376300`	`LXL04_008400`	`JCVI_TKOH_00143`	94.1	95.385 / 31.366	Complex
`TkA03G376390`	`LXL04_008400`	`JCVI_TKOH_00143`	97.0	97.101 / 55.312	Review
`TkA03G376540`	`LXL04_008399`	`JCVI_TKOH_00143`	95.6	100.0 / 100.0	Strict
`TkA03G376900`	`LXL04_008396`	`JCVI_TKOH_00143`	80.4	41.071 / 10.337	Complex
`TkA03G376980`	`LXL04_008395`	`JCVI_TKOH_00143`	95.7	98.807 / 94.893	Complex
`TkA03G377350`	`LXL04_008394`	`JCVI_TKOH_00143`	99.6	100.0 / 100.0	Strict
`TkA03G378240`	`LXL04_008393`	`JCVI_TKOH_00143`	99.9	100.0 / 100.0	Complex
`TkA03G378500`	`LXL04_008392`	`JCVI_TKOH_00143`	100.0	99.405 / 87.895	Complex
`TkA03G378750`	`LXL04_008390`	`JCVI_TKOH_00143`	89.0	90.099 / 32.042	Review
`TkA03G378850`	`LXL04_008386`	`JCVI_TKOH_00143`	55.7	88.235 / 37.589	Complex
`TkA03G378960`	`LXL04_008388`	`JCVI_TKOH_00143`	87.5	100.0 / 100.0	Complex
`TkA03G379000`	`LXL04_008388`	`JCVI_TKOH_00143`	100.0	100.0 / 62.997	Complex
`TkA03G379050`	`LXL04_008387`	`JCVI_TKOH_00143`	100.0	100.0 / 79.487	Complex
`TkA03G379180`	`LXL04_008380`	`JCVI_TKOH_00143`	73.0	93.064 / 49.096	Complex
`TkA03G379270`	`LXL04_008380`	`JCVI_TKOH_00143`	70.0	95.082 / 64.157	Complex
`TkA03G379410`	`LXL04_008381`	`JCVI_TKOH_00143`	97.8	100.0 / 42.462	Review
`TkA03G379470`	`LXL04_008381`	`JCVI_TKOH_00143`	97.9	100.0 / 100.0	Review
`TkA03G379830`	`LXL04_008380`	`JCVI_TKOH_00143`	97.7	99.254 / 80.12	Complex
`TkA03G379840`	`LXL04_008381`	`JCVI_TKOH_00143`	85.6	100.0 / 53.231	Complex
`TkA03G379860`	`LXL04_008381`	`JCVI_TKOH_00143`	84.5	67.742 / 25.846	Complex
`TkA03G379870`	`LXL04_008379`	`JCVI_TKOH_00143`	100.0	100.0 / 100.0	Complex
`TkA03G380200`	`LXL04_008377`	`JCVI_TKOH_00143`	89.9	100.0 / 100.0	Review
`TkA03G380220`	`LXL04_008374`	`JCVI_TKOH_00143`	67.5	100.0 / 100.0	Complex
`TkA03G380260`	`LXL04_008373`	`JCVI_TKOH_00143`	98.9	100.0 / 100.0	Strict
`TkA03G380270`	`LXL04_008372`	`JCVI_TKOH_00143`	98.0	100.0 / 100.0	Strict
`TkA03G380610`	`LXL04_008367`	`JCVI_TKOH_00143`	99.2	100.0 / 100.0	Strict
`TkA03G380670`	`LXL04_008364`	`JCVI_TKOH_00143`	96.2	100.0 / 100.0	Complex
`TkA03G380710`	`LXL04_008364`	`JCVI_TKOH_00143`	100.0	100.0 / 100.0	Complex
`TkA03G380800`	`LXL04_008362`	`JCVI_TKOH_00143`	80.4	100.0 / 60.586	Review