Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2699 bp · TkAUNG093400|TK1151|cDNA
TTTACTCATTCTATAATCAAAACAGTTAAACATAATGTTATTCTTTGACAGATCTTCATTACAACAACTTTTATGAAACAATCAAACAACTGAACAAGAATCAAGACTAAAGTCAAAACAGTTAAACAATCAAACAAGGAGTACATGACTGAAATTGAAGGTAAAACATAACTGATTACTGAAGGAGAAGGACTGAAGGAGAGATTAACATACCTTACGATCCTGAACACTGCTGAAGTCGGAGAAGATGAAGCTGCTGG...
1701 bp · TkAUNG093400|TK1151|CDS
ATGATTCTTCAACGTTCGATTCCTATTCTCAGTTTCTGCAAATCAACTTCATTATCATCCTCCCCCAAATTCCTCTTCTTACCTTTCAACTCACCACCACAAACATTTCGTTTCCACCACCACCACCACCACCACCGCAGCCAAATCAGGGCCTTTACCGCCACCACCACCACCACCACCACCACAGATGAAAAGGAAACCGATACCTTCTTTGCAGACGACACTGTTTCCTGGACATCCCTTGGGGTTGTTGACAGACT...
Protein
Download Protein FASTA566 aa · TkAUNG093400|TK1151|PROTEIN
MILQRSIPILSFCKSTSLSSSPKFLFLPFNSPPQTFRFHHHHHHHRSQIRAFTATTTTTTTTDEKETDTFFADDTVSWTSLGVVDRLSQSLSRIGLNRPSLIQALSIPPILHGHDVVVAAETGSGKTHGYLVPLFHNLSTTTNETVNRPHKSLVLCPNVMLCEQVVRMANYICNDNGEPLLKVAAVCGRQGWPVHEPNIIVSTPAALLNYLHAIDPERRRRADFIRDVKHVVFDEADMLLCGSFQNQVIRLINMFRFDEK...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkAUNG093400 |
|---|---|
| TK1151 ID | TkAUNG093400 |
| OH-1004 ID | LXL04_020951 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 98.800 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkAUNG093400 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | ChrUn:26440494-26449929 (-) | ||||||||||||
| Description | Similar to RH22: DEAD-box ATP-dependent RNA helicase 22 | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
| ||||||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0000398 mRNA splicing, via spliceosome Biological Process GO:0006364 rRNA processing Biological Process GO:0005576 extracellular region Cellular Component GO:0005730 nucleolus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0009507 chloroplast Cellular Component GO:0071013 catalytic step 2 spliceosome Cellular Component GO:0003723 RNA binding Molecular Function GO:0003724 RNA helicase activity Molecular Function GO:0003729 mRNA binding Molecular Function GO:0005524 ATP binding Molecular Function GO:0016887 ATP hydrolysis activity Molecular Function | ||||||||||||
| KEGG gene cross-reference | ath:AT1G59990 cnb:CNBL0260 cne:CNH00280 dosa:Os03g0708600 dosa:Os09g0383400 osa:4333866 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00270DEAD45-58 aaPF00270DEAD102-256 aaPF04851ResIII114-236 aaPF00271Helicase_C146-174 aaPF00270DEAD324-351 aaPF21090P-loop_SecA389-556 aaPF00271Helicase_C394-501 aaPF00270DEAD398-433 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkAUNG093400 | PF00270 | DEAD | 45 | 58 | 5e-25 | 88.9 |
| TkAUNG093400 | PF00270 | DEAD | 102 | 256 | 5e-25 | 88.9 |
| TkAUNG093400 | PF04851 | ResIII | 114 | 236 | 0.0096 | 16.6 |
| TkAUNG093400 | PF00271 | Helicase_C | 146 | 174 | 3.9e-23 | 82.5 |
| TkAUNG093400 | PF00270 | DEAD | 324 | 351 | 5e-25 | 88.9 |
| TkAUNG093400 | PF21090 | P-loop_SecA | 389 | 556 | 0.0025 | 18.2 |
| TkAUNG093400 | PF00271 | Helicase_C | 394 | 501 | 3.9e-23 | 82.5 |
| TkAUNG093400 | PF00270 | DEAD | 398 | 433 | 5e-25 | 88.9 |
| TkAUNG093400 | PF04851 | ResIII | 401 | 427 | 0.0096 | 16.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.