TkAUNG091890 | RubberDandelionOmics

Gene overview

TkAUNG091890

Reference: TK1151 Chr: ChrUn Coordinates: 26020971-26021853 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

533 bp · TkAUNG091890|TK1151|cDNA

GAGCCTTTCTTTTATGGGCATGACAACCAGGACCAGCTTGTCAAAATTGCTAGGGTGCTTGGGACTGATGAATTAAATGCATATTTGAACAAGTATCAGCTAGAACTTGAACCTCAACTTGAAGCTCTTGTTGGAAGGCATAGCAGGAAACCATGGTCAAAATTCATGAATGCAGATAATCAGCATTTAGTATCTCCAGAGGCCATTGACTTTCTGGATAAACTTCTTCGCTATGACCATCAGGATAGGCTCACAGCAAA...

CDS

Download CDS FASTA

330 bp · TkAUNG091890|TK1151|CDS

GAGCCTTTCTTTTATGGGCATGACAACCAGGACCAGCTTGTCAAAATTGCTAGGGTGCTTGGGACTGATGAATTAAATGCATATTTGAACAAGTATCAGCTAGAACTTGAACCTCAACTTGAAGCTCTTGTTGGAAGGCATAGCAGGAAACCATGGTCAAAATTCATGAATGCAGATAATCAGCATTTAGTATCTCCAGAGGCCATTGACTTTCTGGATAAACTTCTTCGCTATGACCATCAGGATAGGCTCACAGCAAA...

Protein

Download Protein FASTA

109 aa · TkAUNG091890|TK1151|PROTEIN

EPFFYGHDNQDQLVKIARVLGTDELNAYLNKYQLELEPQLEALVGRHSRKPWSKFMNADNQHLVSPEAIDFLDKLLRYDHQDRLTAKEAMGHPYFMQVRAAENSRMRTQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG091890`
TK1151 ID	TkAUNG091890
OH-1004 ID	LXL04_013611
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	77.600
Protein coverage (%)	TK1151 98.165 / OH-1004 24.099 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkAUNG091890

Location ChrUn:26020971-26021853 (-)

Description Similar to CKA4: Casein kinase II subunit alpha-4, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g67380`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.	Cloning and characterization of two cDNAs encoding casein kinase II catalytic subunits in Arabidopsis thaliana.1993 · DOI: 10.1007/bf00019944 Reconstitution of Arabidopsis casein kinase II from recombinant subunits and phosphorylation of transcription factor GBF1.1995 · DOI: 10.1105/tpc.7.1.105
`At3g50000`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates (By similarity).	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: Q9AR27`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.	No verified direct reference in this release
`UniProt: B6F107`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013611 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006281 DNA repair Biological Process

GO:0006325 chromatin organization Biological Process

GO:0006974 DNA damage response Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009648 photoperiodism Biological Process

GO:0009908 flower development Biological Process

GO:0010019 chloroplast-nucleus signaling pathway Biological Process

GO:0010187 negative regulation of seed germination Biological Process

GO:0010225 response to UV-C Biological Process

GO:0010229 inflorescence development Biological Process

GO:0010332 response to gamma radiation Biological Process

GO:0040008 regulation of growth Biological Process

KEGG gene cross-reference

ath:AT2G23070

ath:AT5G67380

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.574

Rank 1 · TkAUNG091890 · TK1151

Nucleus0.538

Rank 2 · TkAUNG091890 · TK1151

Cell membrane0.067

Rank 3 · TkAUNG091890 · TK1151

Mitochondrion0.056

Rank 4 · TkAUNG091890 · TK1151

Endoplasmic reticulum0.044

Rank 5 · TkAUNG091890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase42-95 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG091890	`PF00069`	Pkinase	42	95	3.3e-07	30.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q08467`	Arabidopsis thaliana	sp\|Q08467\|CSK21_ARATH Casein kinase II subunit alpha-1	92.700%	Swiss-Prot	High
`Q08466`	Arabidopsis thaliana	sp\|Q08466\|CSK22_ARATH Casein kinase II subunit alpha-2	91.700%	Swiss-Prot	High
`Q9AR27`	Oryza sativa subsp. indica	sp\|Q9AR27\|HD6_ORYSI Casein kinase II subunit alpha-2	87.200%	Swiss-Prot	High
`B6F107`	Oryza sativa subsp. japonica	sp\|B6F107\|HD6_ORYSJ Casein kinase II subunit alpha-2	87.200%	Swiss-Prot	High

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