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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G425870
Reference: TK1151 Chr: Chr08 Coordinates: 108183366-108190728 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4423 bp · TkA08G425870|TK1151|cDNA

CATTTTTAAAACTTTTCAACAAACCAATAAACTCTCCAGAAATCACAAGACGAAGTAGATGATCAACTTTACTGGAATGCCGGTTTCGTATCATACCATCCTTTGAACCACGATCCTTGAAAATAATCATACGATTGTTATGGTTCGGTTAAACCCTACATTTCTTCAATCGATTTGTCCAAAAGCACGAAATGTTCCCAGCAGATTCAAATTTCGATCGATGATTGTCTGCATGAAGGATAATTTGTGTTAATAATGTC...

CDS

Download CDS FASTA

3171 bp · TkA08G425870|TK1151|CDS

ATGGCAGAATTACGTGTTCTTAGGCTATTTGGGAATCCGCTTGAATATCTTCCCCAAATTTTGCCTTTGCACCAACTCCGCCACCTTTCTCTTTCAAACATCCGTATTGTTGCAGACGATCATCTAAGATCAGTGAATGTGCAGATAGAGATGGAGAATAGTTCTTATTTTTCATCACGACACAAGCTGAGTGCCTTTTTTGCCCTTATATTTCGGTATTCTTCATGCCACCACCCTTTGCTTGCATCCGCTCTTGCAAA...

Protein

Download Protein FASTA

1056 aa · TkA08G425870|TK1151|PROTEIN

MAELRVLRLFGNPLEYLPQILPLHQLRHLSLSNIRIVADDHLRSVNVQIEMENSSYFSSRHKLSAFFALIFRYSSCHHPLLASALAKMMHDEGNRVVICKDDNAVRQLISMISSENHHVVEQACSALTSLASDVSVSLQLMKCDIMQPIQSVLNSAGPQELKSVLQVVAKLGFVCDTVAQKMMNKDVMRSLKILCAHKDPEVQRSALVAIGNLAFCLENRMILVASESLRDILLRLTVTFEFRVRKAAARVLAILGENES...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G425870
TK1151 IDTkA08G425870
OH-1004 IDLXL04_034702
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)95.700
Protein coverage (%)TK1151 100.000 / OH-1004 80.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G425870
LocationChr08:108183366-108190728 (+)
DescriptionSimilar to PLA1: Phospholipase A I
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g61850 Possesses non-specific lipolytic acyl hydrolase (LAH) activity.
AtPLAI is an acyl hydrolase involved in basal jasmonic acid production and Arabidopsis resistance to Botrytis cinerea.2007 · DOI: 10.1074/jbc.m700405200

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_034702 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006631 fatty acid metabolic process Biological Process
GO:0009620 response to fungus Biological Process
GO:0009695 jasmonic acid biosynthetic process Biological Process
GO:0016042 lipid catabolic process Biological Process
GO:0019369 arachidonate metabolic process Biological Process
GO:0032048 cardiolipin metabolic process Biological Process
GO:0034638 phosphatidylcholine catabolic process Biological Process
GO:0035556 intracellular signal transduction Biological Process
GO:0043651 linoleic acid metabolic process Biological Process
GO:0046338 phosphatidylethanolamine catabolic process Biological Process
GO:0050482 arachidonate secretion Biological Process
GO:0050832 defense response to fungus Biological Process
KEGG gene cross-reference
hsa:50640
mmu:67452
ocu:100328577
rno:314075
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.458
Rank 1 · TkA08G425870 · TK1151
Nucleus0.296
Rank 2 · TkA08G425870 · TK1151
Mitochondrion0.143
Rank 3 · TkA08G425870 · TK1151
Cell membrane0.142
Rank 4 · TkA08G425870 · TK1151
Endoplasmic reticulum0.110
Rank 5 · TkA08G425870 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12799LRR_44-39 aa
PF02310B12-binding72-128 aa
PF08167RIX181-132 aa
PF24768ARM_ARMC585-226 aa
PF00514Arm93-132 aa
PF11698V-ATPase_H_C93-130 aa
PF12717Cnd198-171 aa
PF13646HEAT_2100-135 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G425870PF12799LRR_44390.005317.7
TkA08G425870PF02310B12-binding721280.1113.1
TkA08G425870PF08167RIX1811320.3811.1
TkA08G425870PF24768ARM_ARMC5852266.3e-0523.2
TkA08G425870PF00514Arm931323.1e-1040.5
TkA08G425870PF11698V-ATPase_H_C931306.17.7
TkA08G425870PF12717Cnd1981710.3411.7
TkA08G425870PF13646HEAT_21001354.2e-0730.9
TkA08G425870PF08324PUL1002330.06213.3
TkA08G425870PF13513HEAT_EZ1031290.0117.0
TkA08G425870PF23271HEAT_GCN11041440.07613.8
TkA08G425870PF02985HEAT1071327.4e-0523.4
TkA08G425870PF08167RIX11492110.3811.1
TkA08G425870PF11698V-ATPase_H_C1622136.17.7
TkA08G425870PF23271HEAT_GCN11782330.07613.8
TkA08G425870PF12717Cnd11812290.3411.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4HX15Arabidopsis thalianasp|F4HX15|LPAI_ARATH Phospholipase A I63.700%Swiss-ProtHigh

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