LXL04_034702 | RubberDandelionOmics

Gene overview

LXL04_034702

Reference: OH-1004 Chr: Chr07 Coordinates: 114304938-114311322 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4098 bp · LXL04_034702|LXL04_034702|OH1004|cDNA

ATGTCGTGGGGATTAGCTTGGAAGAGGCTATCTGATGTGTTTCATCTATCTTTACATTACGGCACGGAGGAAACAATAGATGATCAAAACCGATCACCTTCATCATCACCACCGCCTTCGTCAGGATCATCGTCGGAGTCTTCGTCAAAAGACAACCATATTTGTAACGACCAAGAGTTAGGGTTTCGAATAGATCTCGATTGGAATGCTGCAGATGACGATGCCCAGGTTGCATTGAGGCTTCAGTCTCAGGTAATGGT...

CDS

Download CDS FASTA

4098 bp · LXL04_034702|LXL04_034702|OH1004|CDS

ATGTCGTGGGGATTAGCTTGGAAGAGGCTATCTGATGTGTTTCATCTATCTTTACATTACGGCACGGAGGAAACAATAGATGATCAAAACCGATCACCTTCATCATCACCACCGCCTTCGTCAGGATCATCGTCGGAGTCTTCGTCAAAAGACAACCATATTTGTAACGACCAAGAGTTAGGGTTTCGAATAGATCTCGATTGGAATGCTGCAGATGACGATGCCCAGGTTGCATTGAGGCTTCAGTCTCAGGTAATGGT...

Protein

Download Protein FASTA

1365 aa · LXL04_034702|LXL04_034702|OH1004|PROTEIN

MSWGLAWKRLSDVFHLSLHYGTEETIDDQNRSPSSSPPPSSGSSSESSSKDNHICNDQELGFRIDLDWNAADDDAQVALRLQSQVMVALPLPQDTVVITLSACDGSGGDGDGDGNLVSVGMKVVKQRDPLRAVAMSRVGGSGQQYDGMGVLTKLMQSDFAAESGSGTGQAVGAGVRLCPDHWVNVTVVSVYNCGLSTLPVELTKLPLLEKLYLDNNKLSNLPPELGDMKSLKVLTVDYNMLVAVPVELRKCIGLVELSLE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_034702`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_034702

Location Chr07:114304938-114311322 (+)

Description Similar to PLA1: Phospholipase A I

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g61850`	Possesses non-specific lipolytic acyl hydrolase (LAH) activity.	AtPLAI is an acyl hydrolase involved in basal jasmonic acid production and Arabidopsis resistance to Botrytis cinerea.2007 · DOI: 10.1074/jbc.m700405200

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_034702 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006631 fatty acid metabolic process Biological Process

GO:0009620 response to fungus Biological Process

GO:0009695 jasmonic acid biosynthetic process Biological Process

GO:0016042 lipid catabolic process Biological Process

GO:0019369 arachidonate metabolic process Biological Process

GO:0032048 cardiolipin metabolic process Biological Process

GO:0034638 phosphatidylcholine catabolic process Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0043651 linoleic acid metabolic process Biological Process

GO:0046338 phosphatidylethanolamine catabolic process Biological Process

GO:0050482 arachidonate secretion Biological Process

GO:0050832 defense response to fungus Biological Process

KEGG gene cross-reference

hsa:50640

mmu:67452

ocu:100328577

rno:314075

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.405

Rank 1 · LXL04_034702 · OH-1004

Nucleus0.291

Rank 2 · LXL04_034702 · OH-1004

Cell membrane0.151

Rank 3 · LXL04_034702 · OH-1004

Mitochondrion0.140

Rank 4 · LXL04_034702 · OH-1004

Endoplasmic reticulum0.122

Rank 5 · LXL04_034702 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12799.14LRR_4184-222 aa

PF13855.13LRR_8207-264 aa

PF00514.30Arm366-405 aa

PF01734.28Patatin551-829 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_034702	`PF12799.14`	LRR_4	184	222	1.6e-10	41.5
LXL04_034702	`PF13855.13`	LRR_8	207	264	3.2e-08	33.9
LXL04_034702	`PF00514.30`	Arm	366	405	6.1e-10	39.5
LXL04_034702	`PF01734.28`	Patatin	551	829	4.3e-18	66.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4HX15`	Arabidopsis thaliana	Phospholipase A I	61.475%	Swiss-Prot	strong database homology

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