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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G265480
Reference: TK1151 Chr: Chr08 Coordinates: 69175598-69179970 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2346 bp · TkA08G265480|TK1151|cDNA

ATCGATGATCCGATCCAGTCTATTCCATTTCTACCAACTAAAATCACTTTCTTCTTCTTTCAGCGATACAAAATTAGGCTTTTAGCAGTTTTTACTGCTCAAGCAACTTTGACATTCGGGTATTCAAAGAAAAAAGGAAGACTATTTCCTTCTTTCATACTATAGAATGGCAATTTCTTCCCAATAAAACCTTCCGGAGCAGAAAGTTCTCATCTTGGAATAGTTCTCCGGTACATAATGTTCAGAAAGATCATTTCTTC...

CDS

Download CDS FASTA

1911 bp · TkA08G265480|TK1151|CDS

ATGTTCAGAAAGATCATTTCTTCCCATTCTAAGTCAAAGACAAGAAAATTTGTATCGATATCACATCATTCCACCAACTATTGCTACTACGATCACTCAGCACCACCTTCTTCCCCATCAAAACACATTTCCTCCAGACAAAAATGGCTTGATATCACACCAACTTCATTAAAGGGTTTCAATCGATCTTTTTCAGCTGGGTACCGGTTAAATTCGACGCAGTATAGTGGGTCTAATTTGAATAAAAGAAATAGGTTTTC...

Protein

Download Protein FASTA

636 aa · TkA08G265480|TK1151|PROTEIN

MFRKIISSHSKSKTRKFVSISHHSTNYCYYDHSAPPSSPSKHISSRQKWLDITPTSLKGFNRSFSAGYRLNSTQYSGSNLNKRNRFSVRRGFSSETVRECINYDVVIVGGGPAGLSAAIRLKQLCRESDVDLSVCVVEKGAEVGAHILSGNVFEPRALNELIPQWREEEAPISVSVSSDKFMLLTEKHAIPLPNPFDNKGNYVISLSQFVRWLGQKAEELGVEVYPGFAAKEVLFDENENVIGIATNDMGIGKDGSKKDN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G265480
TK1151 IDTkA08G265480
OH-1004 IDLXL04_033432
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.400
Protein coverage (%)TK1151 98.742 / OH-1004 89.714
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G265480
LocationChr08:69175598-69179970 (-)
DescriptionSimilar to ETFQO: Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g43400 Links fatty acid beta-oxidation and amino acid catabolism to the respiratory chain by transferring electrons from the electron transfer flavoprotein (ETF) to ubiquinone.
The critical role of Arabidopsis electron-transfer flavoprotein:ubiquinone oxidoreductase during dark-induced starvation.2005 · DOI: 10.1105/tpc.105.035162
Identification of the 2-hydroxyglutarate and isovaleryl-CoA dehydrogenases as alternative electron donors linking lysine catabolism to the electron transport chain of Arabidopsis mitochondria.2010 · DOI: 10.1105/tpc.110.075630

Rice

Reference gene IDPossible functionPapers / DOI
Os10g0516300 Links fatty acid beta-oxidation and amino acid catabolism to the respiratory chain by transferring electrons from the electron transfer flavoprotein (ETF) to ubiquinone. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_033432 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006552 L-leucine catabolic process Biological Process
GO:0006979 response to oxidative stress Biological Process
GO:0009646 response to absence of light Biological Process
GO:0010230 alternative respiration Biological Process
GO:0022900 electron transport chain Biological Process
GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005743 mitochondrial inner membrane Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0031966 mitochondrial membrane Cellular Component
KEGG gene cross-reference
ath:AT2G43400
ddi:DDB_G0278849
dosa:Os10g0516300
rno:295143
ssc:100515785
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.953
Rank 1 · TkA08G265480 · TK1151
Cytoplasm0.048
Rank 2 · TkA08G265480 · TK1151
Nucleus0.041
Rank 3 · TkA08G265480 · TK1151
Cell membrane0.024
Rank 4 · TkA08G265480 · TK1151
Plastid0.013
Rank 5 · TkA08G265480 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21162ETFQO_UQ-bd63-80 aa
PF01946Thi495-153 aa
PF07992Pyr_redox_2103-143 aa
PF01494FAD_binding_3103-225 aa
PF01266DAO104-146 aa
PF00890FAD_binding_2104-147 aa
PF05834Lycopene_cycl104-143 aa
PF03486HI0933_like104-228 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G265480PF21162ETFQO_UQ-bd63802.7e-42143.9
TkA08G265480PF01946Thi4951531.8e-0628.1
TkA08G265480PF07992Pyr_redox_21031431.8e-0525.0
TkA08G265480PF01494FAD_binding_31032250.0009419.2
TkA08G265480PF01266DAO1041462.1e-0731.6
TkA08G265480PF00890FAD_binding_21041473e-0524.1
TkA08G265480PF05834Lycopene_cycl1041430.0001521.7
TkA08G265480PF03486HI0933_like1042280.0002121.6
TkA08G265480PF12831FAD_oxidored1041440.003917.2
TkA08G265480PF04820Trp_halogenase1041380.00416.8
TkA08G265480PF01134GIDA1041240.1711.6
TkA08G265480PF00070Pyr_redox1051250.03515.3
TkA08G265480PF13738Pyr_redox_31061460.0008119.4
TkA08G265480PF13454NAD_binding_91061450.001619.2
TkA08G265480PF13450NAD_binding_81071524.2e-0730.9
TkA08G265480PF04820Trp_halogenase2022870.00416.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O22854Arabidopsis thalianasp|O22854|ETFD_ARATH Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial77.100%Swiss-ProtHigh
Q337B8Oryza sativa subsp. japonicasp|Q337B8|ETFD_ORYSJ Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial77.000%Swiss-ProtHigh

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