RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G243680
Reference: TK1151 Chr: Chr08 Coordinates: 63666189-63668117 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1595 bp · TkA08G243680|TK1151|cDNA

CAAATGACGACTACCCGTAGACGGTAAAGAGTCAACTGTCATCGTCTTCTTGTAAGAGACTCCAATTTAGGGGTTTTCCAAAATCTTAAGCCGGTACGTCCGAAGATCCCCCAAAATGGAAGCAAATCAGGCGGCATCCGGTGGCGGAAGTGGAGGAGGCGGAGGAGGACCAGCTCCCTTTCTTCTCAAGACGTACGATATGGTTGATGACTCCATGACTGACGAAATAGTGTCGTGGAGCACAAACAGAAACAGTTTCG...

CDS

Download CDS FASTA

1281 bp · TkA08G243680|TK1151|CDS

ATGGAAGCAAATCAGGCGGCATCCGGTGGCGGAAGTGGAGGAGGCGGAGGAGGACCAGCTCCCTTTCTTCTCAAGACGTACGATATGGTTGATGACTCCATGACTGACGAAATAGTGTCGTGGAGCACAAACAGAAACAGTTTCGTCGTGTGGAACCCTCCTGAATTTGCTCGCCTCTTGTTACCTACCTATTTTAAGCACAACAATTTTTCCAGCTTCATTAGACAGCTCAATACCTATGGTTTCAGAAAGATCGATCC...

Protein

Download Protein FASTA

426 aa · TkA08G243680|TK1151|PROTEIN

MEANQAASGGGSGGGGGGPAPFLLKTYDMVDDSMTDEIVSWSTNRNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPERWEFANEEFVKDQKHLLKNIHRRKPIHSHSTNPQASAIDPERAAFEEEIDKLTREKASLEKNISRFKQQQPVSKLQLEDLTHRVNTIEERQDTLLSFLKKAAQNPDFVEHLAQKLESMDLSADNKKRRFFPDDNNNNNNNSLPQSPPRPDFGNIFHRDFSNKLRLELSPAVS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G243680
TK1151 IDTkA08G243680
OH-1004 IDLXL04_033245
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)94.200
Protein coverage (%)TK1151 100.000 / OH-1004 38.975
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G243680
LocationChr08:63666189-63668117 (+)
DescriptionSimilar to PCMP-H13: Pentatricopeptide repeat-containing protein At4g14050, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g13980 Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). No verified direct reference in this release
At4g17750 Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). No verified direct reference in this release
At4g18880 Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0496100 Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). No verified direct reference in this release
Os01g0749300 Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_033245 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0016554 cytidine to uridine editing Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G25360
ath:AT2G22070
ath:AT4G14050
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.845
Rank 1 · TkA08G243680 · TK1151
Cytoplasm0.274
Rank 2 · TkA08G243680 · TK1151
Mitochondrion0.027
Rank 3 · TkA08G243680 · TK1151
Cell membrane0.025
Rank 4 · TkA08G243680 · TK1151
Endoplasmic reticulum0.016
Rank 5 · TkA08G243680 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00447HSF_DNA-bind22-111 aa
PF24525TTC393-207 aa
PF28019HmpF96-208 aa
PF27575Map3k7cl96-158 aa
PF17675APG6_N119-157 aa
PF11932DUF3450119-189 aa
PF26095CC_Bre1119-180 aa
PF04977DivIC124-156 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G243680PF00447HSF_DNA-bind221113.1e-29102.2
TkA08G243680PF24525TTC3932070.05513.6
TkA08G243680PF28019HmpF962080.03813.2
TkA08G243680PF27575Map3k7cl961580.7610.9
TkA08G243680PF17675APG6_N1191570.01716.2
TkA08G243680PF11932DUF34501191890.03114.3
TkA08G243680PF26095CC_Bre11191800.1113.5
TkA08G243680PF04977DivIC1241560.00119.5
TkA08G243680PF12325TMF_TATA_bd1271870.009916.7
TkA08G243680PF27720SSNA11271920.1413.0
TkA08G243680PF29997SPC25_N1281840.05214.6
TkA08G243680PF25078DUF78011301770.02615.4
TkA08G243680PF16326ABC_tran_CTD1311810.4711.4
TkA08G243680PF17675APG6_N1332250.01716.2
TkA08G243680PF29310ZK6521352070.01216.3
TkA08G243680PF04977DivIC1622010.00119.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q94BZ5Arabidopsis thalianasp|Q94BZ5|HSFA5_ARATH Heat stress transcription factor A-551.900%Swiss-ProtHigh
P41151Arabidopsis thalianasp|P41151|HFA1A_ARATH Heat stress transcription factor A-1a51.200%Swiss-ProtLow
O49403Arabidopsis thalianasp|O49403|HFA4A_ARATH Heat stress transcription factor A-4a53.800%Swiss-ProtLow
Q6K6S5Oryza sativa subsp. japonicasp|Q6K6S5|HSFA5_ORYSJ Heat stress transcription factor A-547.200%Swiss-ProtMedium
Q94J16Oryza sativa subsp. japonicasp|Q94J16|HFA4B_ORYSJ Heat stress transcription factor A-4b36.000%Swiss-ProtMedium

JBrowse

View in Genome Browser