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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G231040
Reference: TK1151 Chr: Chr08 Coordinates: 60179325-60180061 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

636 bp · TkA08G231040|TK1151|cDNA

ATGGGTACCTTAACCTTCCGGTGGTGGATTACAGCTGTTTTGGTGATCGCCGTCGGTGTGACGGTGGATGCTTGCCCGGCGTCGGATAGGGCATCGTTGCTCGCCTTCAAAGCTGCTTTACATGAACCTCATTTAGGCATCTTTAATTCGTGGACGGGCACCGACTGTTGTAACAAATGGTACGGTATTACTTGCGACCCGACTACTAAACGGGTTGCGGATATAGCGCTCCGTGGAGAGTCCGAGGATCCAATTTTTCA...

CDS

Download CDS FASTA

636 bp · TkA08G231040|TK1151|CDS

ATGGGTACCTTAACCTTCCGGTGGTGGATTACAGCTGTTTTGGTGATCGCCGTCGGTGTGACGGTGGATGCTTGCCCGGCGTCGGATAGGGCATCGTTGCTCGCCTTCAAAGCTGCTTTACATGAACCTCATTTAGGCATCTTTAATTCGTGGACGGGCACCGACTGTTGTAACAAATGGTACGGTATTACTTGCGACCCGACTACTAAACGGGTTGCGGATATAGCGCTCCGTGGAGAGTCCGAGGATCCAATTTTTCA...

Protein

Download Protein FASTA

211 aa · TkA08G231040|TK1151|PROTEIN

MGTLTFRWWITAVLVIAVGVTVDACPASDRASLLAFKAALHEPHLGIFNSWTGTDCCNKWYGITCDPTTKRVADIALRGESEDPIFQKAKRTGYMTGSISPAICNLERLSNVIISDWKGISGTVPSCITSLPFLRHLDLVGNQISGEIPSDIGKLHLLTVLNLADNKITGRIPRSIANLTSLMHLDLRNNMISLSSLRPRSLVKPDLRTDS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G231040
TK1151 IDTkA08G231040
OH-1004 IDLXL04_033107
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)98.600
Protein coverage (%)TK1151 68.246 / OH-1004 39.237
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G231040
LocationChr08:60179325-60180061 (-)
DescriptionSimilar to DRT100: DNA damage-repair/toleration protein DRT100
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g12610 This protein is able to complement bacterial recA mutations, but its native function in the plant is not known. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_033107 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006281 DNA repair Biological Process
GO:0007165 signal transduction Biological Process
GO:0010228 vegetative to reproductive phase transition of meristem Biological Process
GO:0048364 root development Biological Process
GO:0048510 regulation of timing of transition from vegetative to reproductive phase Biological Process
GO:0048574 long-day photoperiodism, flowering Biological Process
GO:0051302 regulation of cell division Biological Process
GO:0090511 periclinal cell division Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT3G12145
ath:AT3G12610
ath:AT3G56370
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.563
Rank 1 · TkA08G231040 · TK1151
Extracellular0.196
Rank 2 · TkA08G231040 · TK1151
Endoplasmic reticulum0.118
Rank 3 · TkA08G231040 · TK1151
Cytoplasm0.080
Rank 4 · TkA08G231040 · TK1151
Nucleus0.043
Rank 5 · TkA08G231040 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263LRRNT_227-66 aa
PF00560LRR_196-106 aa
PF25013LRR_Zer-1107-140 aa
PF08263LRRNT_2115-121 aa
PF00560LRR_1120-131 aa
PF12799LRR_4124-144 aa
PF13855LRR_8125-144 aa
PF23598LRR_14126-191 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G231040PF08263LRRNT_227668.3e-1245.9
TkA08G231040PF00560LRR_1961067.7e-1243.6
TkA08G231040PF25013LRR_Zer-11071400.008716.9
TkA08G231040PF08263LRRNT_21151218.3e-1245.9
TkA08G231040PF00560LRR_11201317.7e-1243.6
TkA08G231040PF12799LRR_41241442.9e-1143.9
TkA08G231040PF13855LRR_81251442.5e-1247.1
TkA08G231040PF23598LRR_141261918.3e-1141.9
TkA08G231040PF25013LRR_Zer-11281900.008716.9
TkA08G231040PF13516LRR_61321474.9e-0730.0
TkA08G231040PF13855LRR_81341922.5e-1247.1
TkA08G231040PF00560LRR_11341557.7e-1243.6
TkA08G231040PF12799LRR_41341692.9e-1143.9
TkA08G231040PF13516LRR_61561704.9e-0730.0
TkA08G231040PF13855LRR_81582012.5e-1247.1
TkA08G231040PF00560LRR_11581797.7e-1243.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q00874Arabidopsis thalianasp|Q00874|DR100_ARATH DNA damage-repair/toleration protein DRT10058.100%Swiss-ProtMedium

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