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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G227440
Reference: TK1151 Chr: Chr08 Coordinates: 59239292-59241082 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1791 bp · TkA08G227440|TK1151|cDNA

ATGATGTTTATATGGTTGCTTATTTTCATCAACTCGATCAACTCAAGCCATGAACAAGCATTCTATGACGCAACATCTTGTCGAGATGATGGCAATGCTCCAGGGACAAGGTACACTTGCACTAACACCACGTTGACCAAGATGTCATGCCAGACTTTCTTGATTTTCCGAACAAACCATCAGTTTCCGACCATCTCCACCATCGCCACCTTGTTTGGACTGCCACCCGACACCTTACTTGAGTTAAACGTCCACATAGA...

CDS

Download CDS FASTA

1791 bp · TkA08G227440|TK1151|CDS

ATGATGTTTATATGGTTGCTTATTTTCATCAACTCGATCAACTCAAGCCATGAACAAGCATTCTATGACGCAACATCTTGTCGAGATGATGGCAATGCTCCAGGGACAAGGTACACTTGCACTAACACCACGTTGACCAAGATGTCATGCCAGACTTTCTTGATTTTCCGAACAAACCATCAGTTTCCGACCATCTCCACCATCGCCACCTTGTTTGGACTGCCACCCGACACCTTACTTGAGTTAAACGTCCACATAGA...

Protein

Download Protein FASTA

596 aa · TkA08G227440|TK1151|PROTEIN

MMFIWLLIFINSINSSHEQAFYDATSCRDDGNAPGTRYTCTNTTLTKMSCQTFLIFRTNHQFPTISTIATLFGLPPDTLLELNVHIDSSSETLLTDKEVLVPVTCSCSDNFFQAKVNYTVTGNTTLSDTACGVFEGLVKTVTLLEENQNQEVFEVGFVLNVPLKCACPNNGYKYLVTYPLVSGDSVMPVSAKFGISIDDILAVNNLNLDTTVYPETTILVPLRSKPMLNFDVPIFRPPTPGFLPTKQTEGNIKSTKLKKV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G227440
TK1151 IDTkA08G227440
OH-1004 IDLXL04_033048
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G227440
LocationChr08:59239292-59241082 (-)
DescriptionSimilar to LYK4: LysM domain receptor-like kinase 4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g23770 Lysin motif (LysM) receptor kinase that functions as a cell surface receptor in chitin elicitor (chitooligosaccharides) signaling leading to innate immunity.
LYK4, a lysin motif receptor-like kinase, is important for chitin signaling and plant innate immunity in Arabidopsis.2012 · DOI: 10.1104/pp.112.201699
At1g61610 Putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610. No verified direct reference in this release
At1g24030 May be involved in plant defense signaling. No verified direct reference in this release
At5g65600 Promotes hydrogen peroxide H(2)O(2) production and cell death. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_033048 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002237 response to molecule of bacterial origin Biological Process
GO:0002752 cell surface pattern recognition receptor signaling pathway Biological Process
GO:0006468 protein phosphorylation Biological Process
GO:0006952 defense response Biological Process
GO:0009101 glycoprotein biosynthetic process Biological Process
GO:0009877 nodulation Biological Process
GO:0010200 response to chitin Biological Process
GO:0032491 detection of molecule of fungal origin Biological Process
GO:0032499 detection of peptidoglycan Biological Process
GO:0035556 intracellular signal transduction Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0045087 innate immune response Biological Process
KEGG gene cross-reference
ath:AT2G23770
ath:AT2G33580
ath:AT3G01840
ath:AT3G21630
mtr:11410973
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.739
Rank 1 · TkA08G227440 · TK1151
Endoplasmic reticulum0.118
Rank 2 · TkA08G227440 · TK1151
Cytoplasm0.084
Rank 3 · TkA08G227440 · TK1151
Lysosome / Vacuole0.073
Rank 4 · TkA08G227440 · TK1151
Nucleus0.057
Rank 5 · TkA08G227440 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23472LysM2_CERK1_LYK3_4_537-53 aa
PF23446LysM1_NFP_LYK49-107 aa
PF23473LysM3_LYK4_564-83 aa
PF01476LysM64-101 aa
PF23577LysM_RLK64-91 aa
PF23462LysM3_NFP92-103 aa
PF23472LysM2_CERK1_LYK3_4_5111-164 aa
PF23446LysM1_NFP_LYK148-167 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G227440PF23472LysM2_CERK1_LYK3_4_537533.7e-1349.9
TkA08G227440PF23446LysM1_NFP_LYK491071.8e-2177.5
TkA08G227440PF23473LysM3_LYK4_564834.1e-1246.7
TkA08G227440PF01476LysM641011.6e-1041.5
TkA08G227440PF23577LysM_RLK64910.04914.4
TkA08G227440PF23462LysM3_NFP921038e-0627.0
TkA08G227440PF23472LysM2_CERK1_LYK3_4_51111643.7e-1349.9
TkA08G227440PF23446LysM1_NFP_LYK1481671.8e-2177.5
TkA08G227440PF23473LysM3_LYK4_51742224.1e-1246.7
TkA08G227440PF23462LysM3_NFP1742218e-0627.0
TkA08G227440PF23577LysM_RLK1762010.04914.4
TkA08G227440PF01476LysM1822211.6e-1041.5
TkA08G227440PF23446LysM1_NFP_LYK1852221.8e-2177.5
TkA08G227440PF23472LysM2_CERK1_LYK3_4_52002233.7e-1349.9
TkA08G227440PF07714PK_Tyr_Ser-Thr3834574.6e-1040.0
TkA08G227440PF00069Pkinase3834571.4e-0731.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O64825Arabidopsis thalianasp|O64825|LYK4_ARATH LysM domain receptor-like kinase 430.100%Swiss-ProtMedium
Q9SY89Arabidopsis thalianasp|Q9SY89|Y1661_ARATH Putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g6161025.900%Swiss-ProtLow
Q84M95Arabidopsis thalianasp|Q84M95|PBL28_ARATH Probable serine/threonine-protein kinase PBL2825.500%Swiss-ProtLow
Q9LSL5Arabidopsis thalianasp|Q9LSL5|LRK92_ARATH L-type lectin-domain containing receptor kinase IX.227.500%Swiss-ProtLow

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