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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G078270
Reference: TK1151 Chr: Chr08 Coordinates: 20100213-20108087 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4685 bp · TkA08G078270|TK1151|cDNA

TGTACACAAGTTAACTTCTCTCTCTCACACACACAACCAAACACACACACTCTATATAATATCTGGTCCGTCTATCCAGCAAAGCTTTTTCACAAGTTCTCTCTCCCCGCTGTCTCCGTCACTCTCCAACTACTACTACCACCACCGTCTCCCGTCTCTCGTCTCCGGCCAGACACACTCCTTACATTAACCGACAGGCCTCGTGGATCTGATCAGATCCGTGGCTCTCAATCAAGTCCCGGTGAAATGGAGGAGGCTCT...

CDS

Download CDS FASTA

3366 bp · TkA08G078270|TK1151|CDS

TGTACACAAGTTAACTTCTCTCTCTCACACACACAACCAAACACACACACTCTATATAATATCTGGTCCGTCTATCCAGCAAAGCTTTTTCACAAGTTCTCTCTCCCCGCTGTCTCCGTCACTCTCCAACTACTACTACCACCACCGTCTCCCGTCTCTCGTCTCCGGCCAGACACACTCCTTACATTAACCGACAGGCCTCGTGGATCTGATCAGATCCGTGGCTCTCAATCAAGTCCCGGTGAAATGGAGGAGGCTCT...

Protein

Download Protein FASTA

1121 aa · TkA08G078270|TK1151|PROTEIN

CTQVNFSLSHTQPNTHTLYNIWSVYPAKLFHKFSLPAVSVTLQLLLPPPSPVSRLRPDTLLTLTDRPRGSDQIRGSQSSPGEMEEALEMARAKDTKERMAGVERLHELLEASRRSLSSSEVTSLVDCCLDLLKDNNFRVSQGGLQALDSAAVLSGEHLKLHFNALVPATVERLGDAKQPVRDAARRLLLTLMQVSSPTLIVERAGSNAWTHKSWRVREEFARTVTSAIGLFASTELPLQRAILPPILQMLYDPNPGVREA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G078270
TK1151 IDTkA08G078270
OH-1004 IDLXL04_000134
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)80.900
Protein coverage (%)TK1151 4.193 / OH-1004 25.683
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G078270
LocationChr08:20100213-20108087 (-)
DescriptionSimilar to CLASP: CLIP-associated protein
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
UniProt: Q8RWY6 Cortical microtubule plus-end tracking protein required for cell morphogenesis and cell division. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000134 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000226 microtubule cytoskeleton organization Biological Process
GO:0000278 mitotic cell cycle Biological Process
GO:0007026 negative regulation of microtubule depolymerization Biological Process
GO:0009826 unidimensional cell growth Biological Process
GO:0043622 cortical microtubule organization Biological Process
GO:0050821 protein stabilization Biological Process
GO:0051301 cell division Biological Process
GO:0051781 positive regulation of cell division Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005876 spindle microtubule Cellular Component
GO:0005881 cytoplasmic microtubule Cellular Component
KEGG gene cross-reference
ath:AT2G20190
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.710
Rank 1 · TkA08G078270 · TK1151
Nucleus0.201
Rank 2 · TkA08G078270 · TK1151
Golgi apparatus0.151
Rank 3 · TkA08G078270 · TK1151
Cell membrane0.119
Rank 4 · TkA08G078270 · TK1151
Lysosome / Vacuole0.080
Rank 5 · TkA08G078270 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24181TPR_TTI1_C78-195 aa
PF23271HEAT_GCN183-149 aa
PF30821TANGO1_helical83-136 aa
PF10363RTP1_C184-135 aa
PF25574TPR_IMB192-202 aa
PF24173TPR_TTI1_N92-134 aa
PF25782TPR_CAND193-149 aa
PF21041XMAP215_CLASP_TOG94-295 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G078270PF24181TPR_TTI1_C781950.01715.5
TkA08G078270PF23271HEAT_GCN1831491.7e-1455.0
TkA08G078270PF30821TANGO1_helical831361.69.6
TkA08G078270PF10363RTP1_C1841350.03514.9
TkA08G078270PF25574TPR_IMB1922027.9e-0522.2
TkA08G078270PF24173TPR_TTI1_N921340.3210.6
TkA08G078270PF25782TPR_CAND1931495.3e-0730.8
TkA08G078270PF21041XMAP215_CLASP_TOG942952.6e-1557.5
TkA08G078270PF12460MMS19_C941472.87.5
TkA08G078270PF25757TPR_DNAAF5951947.8e-0832.6
TkA08G078270PF20168PDS5982002.1e-0523.3
TkA08G078270PF25786HEAT_GCN1_C1001972.9e-1144.3
TkA08G078270PF21047HEAT_Maestro1001936.1e-0523.7
TkA08G078270PF24987HEAT_EF3_N1081861.9e-1867.7
TkA08G078270PF24714TOR1L1_N1091911.9e-0731.5
TkA08G078270PF01602Adaptin_N1211500.0001621.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8RWY6Arabidopsis thalianasp|Q8RWY6|CLASP_ARATH CLIP-associated protein71.500%Swiss-ProtHigh

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