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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G059280
Reference: TK1151 Chr: Chr08 Coordinates: 15190027-15192723 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2255 bp · TkA08G059280|TK1151|cDNA

GAAAATGAGAAGAAGCTATGCAGGTCGTGGTATGGTACGTCATATAGTTTACTACCGTTCTTCGTGCTCTTCTATCGGTAAAGTTGCAGCATGTTCGTCTTCGAATTCAGCGACGTCATTACGACTGCGGCCGTCCAATCGAAATAGTTTCTCCTCATCATCAGATGCATCCGTGAAAGGAACCTTAGCCGGAATTCAACAGAGAAACTTAGAGGGCAAATTCTCCTCAACAACAAAACCCCAAATTGAGGATAATCGGT...

CDS

Download CDS FASTA

2025 bp · TkA08G059280|TK1151|CDS

ATGAGAAGAAGCTATGCAGGTCGTGGTATGGTACGTCATATAGTTTACTACCGTTCTTCGTGCTCTTCTATCGGTAAAGTTGCAGCATGTTCGTCTTCGAATTCAGCGACGTCATTACGACTGCGGCCGTCCAATCGAAATAGTTTCTCCTCATCATCAGATGCATCCGTGAAAGGAACCTTAGCCGGAATTCAACAGAGAAACTTAGAGGGCAAATTCTCCTCAACAACAAAACCCCAAATTGAGGATAATCGGTGGTT...

Protein

Download Protein FASTA

674 aa · TkA08G059280|TK1151|PROTEIN

MRRSYAGRGMVRHIVYYRSSCSSIGKVAACSSSNSATSLRLRPSNRNSFSSSSDASVKGTLAGIQQRNLEGKFSSTTKPQIEDNRWLGLIRLDNQPNFTSNDQPHDEFSTDVEKIYRILRKFHSRIPKLELALQESGVTVRSGLTERVLNRCGDAGNLGYSFFVWASKQPGYSHNHDIYKSMIKSLGKMRQFGAVWALLEEMRRENPHLITPQVFIVLIRRFASSRMVKKAIQVLDEMPKYKCEPDEYVFGCLLDALCKN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G059280
TK1151 IDTkA08G059280
OH-1004 IDLXL04_030286
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)35.300
Protein coverage (%)TK1151 29.525 / OH-1004 17.736
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G059280
LocationChr08:15190027-15192723 (+)
DescriptionSimilar to At1g77360: Pentatricopeptide repeat-containing protein At1g77360, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g65820 Putative pentatricopeptide repeat-containing protein At5g65820. No verified direct reference in this release
At3g49730 Pentatricopeptide repeat-containing protein At3g49730. No verified direct reference in this release
At5g11310 Pentatricopeptide repeat-containing protein At5g11310, mitochondrial. No verified direct reference in this release
At3g61360 Pentatricopeptide repeat-containing protein At3g61360. No verified direct reference in this release
At2g13420 Pentatricopeptide repeat-containing protein At2g13420, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030286 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007165 signal transduction Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0004672 protein kinase activity Molecular Function
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0106310 protein serine kinase activity Molecular Function
KEGG gene cross-reference
ath:AT1G11050
ath:AT1G52640
ath:AT1G71060
ath:AT1G77360
ath:AT2G48010
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.707
Rank 1 · TkA08G059280 · TK1151
Plastid0.167
Rank 2 · TkA08G059280 · TK1151
Nucleus0.077
Rank 3 · TkA08G059280 · TK1151
Cytoplasm0.028
Rank 4 · TkA08G059280 · TK1151
Cell membrane0.012
Rank 5 · TkA08G059280 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070MSC6_N76-128 aa
PF11035SNAPC276-138 aa
PF17177PPR_long113-126 aa
PF17177PPR_long169-268 aa
PF25058ARM_TT21171-240 aa
PF12921ATP13172-238 aa
PF12854PPR_1176-202 aa
PF29070MSC6_N176-331 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G059280PF29070MSC6_N761282e-1557.5
TkA08G059280PF11035SNAPC2761380.3411.7
TkA08G059280PF17177PPR_long1131261e-2074.8
TkA08G059280PF17177PPR_long1692681e-2074.8
TkA08G059280PF25058ARM_TT211712403.5e-0524.5
TkA08G059280PF12921ATP131722380.0004220.9
TkA08G059280PF12854PPR_11762025.4e-59196.3
TkA08G059280PF29070MSC6_N1763312e-1557.5
TkA08G059280PF24760TPR_IF140_C1762031.2e-0836.2
TkA08G059280PF29834SOV1_C1762040.003217.3
TkA08G059280PF13041PPR_21782061.4e-77256.4
TkA08G059280PF01535PPR1782061e-62204.8
TkA08G059280PF13428TPR_141802080.0008620.5
TkA08G059280PF23276TPR_241832355.4e-30104.7
TkA08G059280PF29978ATP18_TPR1902070.08413.5
TkA08G059280PF24760TPR_IF140_C2132381.2e-0836.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FH87Arabidopsis thalianasp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g6582075.700%Swiss-ProtHigh
P0C8A0Arabidopsis thalianasp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g4973066.400%Swiss-ProtHigh
Q9LFM6Arabidopsis thalianasp|Q9LFM6|PP375_ARATH Pentatricopeptide repeat-containing protein At5g11310, mitochondrial33.200%Swiss-ProtLow
Q9M2C8Arabidopsis thalianasp|Q9M2C8|PP291_ARATH Pentatricopeptide repeat-containing protein At3g6136028.800%Swiss-ProtLow
Q0WP85Arabidopsis thalianasp|Q0WP85|PP150_ARATH Pentatricopeptide repeat-containing protein At2g13420, mitochondrial31.800%Swiss-ProtLow

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