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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G037580
Reference: TK1151 Chr: Chr08 Coordinates: 9569225-9571977 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1536 bp · TkA08G037580|TK1151|cDNA

TTATAATTAAGAAAATAAATTGTTGATGACTAAAAATATACAATATATTATTTATTTATTTTGTTGGATTTTGTCCAAAATAGAAAGTCGGTCGCCGTTTTTAATAATGTTTTGAAGGAAGGAAGTTATTAGTTAAAAGGCGATATTGCCTAAACAAATGGTCCGATCCACCCCATCAGGTTTTCGGTGTTTATTCGGGCACGACAGCAGCACATCACTTCTGCAGTTCTGCTTCGCTCTCGCCTCTCGTCTCCACGTTC...

CDS

Download CDS FASTA

873 bp · TkA08G037580|TK1151|CDS

ATGTCCTTCAGACTGGTTGCCAGGAGATTATTGAGGACCAAACTCTTACCCATTTTCACTCCTGCATCTACACTGCATTCACATGCCACTAGCTTTGGATTTAAAGAAGTAAATGAAGACGAAAAAAGCCAACTTGTTGGTAATGTCTTCACTAAAGTTGCATCAAATTATGACATCATGAATGATTTGATGAGTGGTGGACTCCATAGGCTATGGAAAGAAAGACTTGTTTCAAAATTGAGCCCGTTTCCTGGAATGAA...

Protein

Download Protein FASTA

290 aa · TkA08G037580|TK1151|PROTEIN

MSFRLVARRLLRTKLLPIFTPASTLHSHATSFGFKEVNEDEKSQLVGNVFTKVASNYDIMNDLMSGGLHRLWKERLVSKLSPFPGMKHLDVAGGTGDVAFRILETINSVNRRAIADTLEDDLQQETQIYVCDINPNMLDVGKKRAQQRGLGEQGSLIWVEGDAEKLNFEDNSMDGYTIAFGIRNVTHIEKVLAEAYRVLKKGGRFLCLELSHVEAPVFKQLYDYYSFSVIPVLGELVAGDRDSYQYLVESVRRFPPQEVF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G037580
TK1151 IDTkA08G037580
OH-1004 IDLXL04_017945
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G037580
LocationChr08:9569225-9571977 (-)
DescriptionSimilar to COQ5: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g57300 Methyltransferase required for the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0976600 Methyltransferase required for the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_017945 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006744 ubiquinone biosynthetic process Biological Process
GO:0032259 methylation Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005743 mitochondrial inner membrane Cellular Component
GO:0005759 mitochondrial matrix Cellular Component
GO:0031314 extrinsic component of mitochondrial inner membrane Cellular Component
GO:0032991 protein-containing complex Cellular Component
GO:0008425 2-methoxy-6-polyprenyl-1,4-benzoquinol methyltransferase activity Molecular Function
KEGG gene cross-reference
ath:AT5G57300
bta:533208
dosa:Os01g0976600
gga:416975
hsa:84274
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.951
Rank 1 · TkA08G037580 · TK1151
Cytoplasm0.075
Rank 2 · TkA08G037580 · TK1151
Nucleus0.058
Rank 3 · TkA08G037580 · TK1151
Cell membrane0.034
Rank 4 · TkA08G037580 · TK1151
Plastid0.016
Rank 5 · TkA08G037580 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20922Anamorsin_N23-56 aa
PF05148Methyltransf_824-43 aa
PF01209Ubie_methyltran41-289 aa
PF13847Methyltransf_3184-220 aa
PF08241Methyltransf_1189-102 aa
PF13649Methyltransf_2589-106 aa
PF08242Methyltransf_1289-205 aa
PF01170UPF0020114-174 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G037580PF20922Anamorsin_N23560.1412.6
TkA08G037580PF05148Methyltransf_824430.01815.6
TkA08G037580PF01209Ubie_methyltran412898.4e-85284.5
TkA08G037580PF13847Methyltransf_31842201.1e-1042.2
TkA08G037580PF08241Methyltransf_11891026.3e-1762.7
TkA08G037580PF13649Methyltransf_25891062.7e-1557.6
TkA08G037580PF08242Methyltransf_12892058.1e-0936.8
TkA08G037580PF01170UPF00201141740.07113.5
TkA08G037580PF13649Methyltransf_251212032.7e-1557.6
TkA08G037580PF08241Methyltransf_111262076.3e-1762.7
TkA08G037580PF20922Anamorsin_N1511690.1412.6
TkA08G037580PF05148Methyltransf_81622100.01815.6
TkA08G037580PF20922Anamorsin_N1842090.1412.6
TkA08G037580PF05148Methyltransf_82472730.01815.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LVC8Arabidopsis thalianasp|Q9LVC8|COQ5_ARATH 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial76.800%Swiss-ProtHigh
Q5JNC0Oryza sativa subsp. japonicasp|Q5JNC0|COQ5_ORYSJ 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial71.100%Swiss-ProtHigh

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