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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G026350
Reference: TK1151 Chr: Chr08 Coordinates: 6783799-6788149 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3406 bp · TkA08G026350|TK1151|cDNA

ATTAGGTACATGACTGACACCTCCAATCTAAACCGAAAACAACAACCTTCGATCCTTCATTCTTTCCATTAAAAGGAAACCCATCACCTCCCTCCACTCCCACTTCCACTTCCACCACCGCCACCGCCACCACCATGCAAGCCAGCGCCGGCCTAGTCGCCGGATCTCACAACCGGAACGAGCTCGTTGTCATCCATGGCCACGAAGAACACAAGCCTTTGAAGGATTTGACCGGTCAAGTTTGTGAGATATGTGGGGAC...

CDS

Download CDS FASTA

3123 bp · TkA08G026350|TK1151|CDS

ATGCAAGCCAGCGCCGGCCTAGTCGCCGGATCTCACAACCGGAACGAGCTCGTTGTCATCCATGGCCACGAAGAACACAAGCCTTTGAAGGATTTGACCGGTCAAGTTTGTGAGATATGTGGGGACGAGATCGGCGTCACAGTTGCCGGAGATTTGTTTGTAGCATGTAACGAATGTGGTTTTCCGGTCTGCCGGCCATGCTACGAGTACGAGAGACGAGAAGGTAGCCAGAACTGCCCTCAATGCAAAACCCGATACAA...

Protein

Download Protein FASTA

1040 aa · TkA08G026350|TK1151|PROTEIN

MQASAGLVAGSHNRNELVVIHGHEEHKPLKDLTGQVCEICGDEIGVTVAGDLFVACNECGFPVCRPCYEYERREGSQNCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIDDDQNKNKNIAEAMLQGKMSYGRGPEDDENAQYPPVIAGRSRPVSGEFPISSQPHGEQMLSSLHKRVHPYSAHENGSGRWDEKRDGGWKERMDDWKMQQGNLGAEVDDSVDPDMAMLDEARQPLSRKVPIASSKINPYRMVIVARLF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G026350
TK1151 IDTkA08G026350
OH-1004 IDLXL04_010844
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)70.600
Protein coverage (%)TK1151 97.308 / OH-1004 97.541
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G026350
LocationChr08:6783799-6788149 (-)
DescriptionSimilar to CESA3: Cellulose synthase A catalytic subunit 3 [UDP-forming]
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g17420 Catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation.
Multiple cellulose synthase catalytic subunits are required for cellulose synthesis in Arabidopsis.2000 · DOI: 10.1105/tpc.12.12.2529
Structure of cellulose-deficient secondary cell walls from the irx3 mutant of Arabidopsis thaliana.2002 · DOI: 10.1016/s0031-9422(02)00199-1
Impairment of cellulose synthases required for Arabidopsis secondary cell wall formation enhances disease resistance.2007 · DOI: 10.1105/tpc.106.048058

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: A2Z1C8 Catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation (By similarity). No verified direct reference in this release
Os09g0422500 Catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation (By similarity).
Three distinct rice cellulose synthase catalytic subunit genes required for cellulose synthesis in the secondary wall.2003 · DOI: 10.1104/pp.103.022442
UniProt: A2XNT2 Probable catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation. No verified direct reference in this release
Os03g0837100 Probable catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010844 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006952 defense response Biological Process
GO:0009833 plant-type primary cell wall biogenesis Biological Process
GO:0009834 plant-type secondary cell wall biogenesis Biological Process
GO:0030244 cellulose biosynthetic process Biological Process
GO:0071555 cell wall organization Biological Process
GO:0000139 Golgi membrane Cellular Component
GO:0005768 endosome Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005802 trans-Golgi network Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT5G05170
dosa:Os03g0808100
dosa:Os05g0176100
dosa:Os07g0208500
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.564
Rank 1 · TkA08G026350 · TK1151
Endoplasmic reticulum0.194
Rank 2 · TkA08G026350 · TK1151
Golgi apparatus0.176
Rank 3 · TkA08G026350 · TK1151
Cytoplasm0.134
Rank 4 · TkA08G026350 · TK1151
Lysosome / Vacuole0.085
Rank 5 · TkA08G026350 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14569zf-UDP27-104 aa
PF02318FYVE_231-85 aa
PF26235zf-KKT2_KKT331-69 aa
PF14446Prok-RING_133-71 aa
PF14570zf-RING_437-87 aa
PF05290Baculo_IE-137-89 aa
PF00097zf-C3HC437-82 aa
PF14446Prok-RING_179-88 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G026350PF14569zf-UDP271046e-42142.3
TkA08G026350PF02318FYVE_231850.05114.5
TkA08G026350PF26235zf-KKT2_KKT331690.07313.9
TkA08G026350PF14446Prok-RING_133710.01316.3
TkA08G026350PF14570zf-RING_437872.1e-0524.9
TkA08G026350PF05290Baculo_IE-137890.08213.6
TkA08G026350PF00097zf-C3HC437820.3711.4
TkA08G026350PF14446Prok-RING_179880.01316.3
TkA08G026350PF15713PTPRCAP961780.1813.0
TkA08G026350PF03552Cellulose_synt33110341345.0
TkA08G026350PF13632Glyco_trans_2_35586181.7e-0628.7
TkA08G026350PF13632Glyco_trans_2_36818351.7e-0628.7
TkA08G026350PF13632Glyco_trans_2_396710131.7e-0628.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SWW6Arabidopsis thalianasp|Q9SWW6|CESA7_ARATH Cellulose synthase A catalytic subunit 7 [UDP-forming]84.100%Swiss-ProtHigh
A2Z1C8Oryza sativa subsp. indicasp|A2Z1C8|CESA9_ORYSI Cellulose synthase A catalytic subunit 9 [UDP-forming]82.300%Swiss-ProtHigh
Q69P51Oryza sativa subsp. japonicasp|Q69P51|CESA9_ORYSJ Cellulose synthase A catalytic subunit 9 [UDP-forming]82.300%Swiss-ProtHigh
A2XNT2Oryza sativa subsp. indicasp|A2XNT2|CESA5_ORYSI Probable cellulose synthase A catalytic subunit 5 [UDP-forming]68.000%Swiss-ProtHigh
Q851L8Oryza sativa subsp. japonicasp|Q851L8|CESA5_ORYSJ Probable cellulose synthase A catalytic subunit 5 [UDP-forming]68.000%Swiss-ProtHigh

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