TkA08G022110 | RubberDandelionOmics

Gene overview

TkA08G022110

Reference: TK1151 Chr: Chr08 Coordinates: 5575127-5576657 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

315 bp · TkA08G022110|TK1151|cDNA

ATGGATCGCGACCAGGTGGTTGTCCGGGCATGGCCGAGAAGTGCTCGAGTAGGTGTGGATCGCGACCAGGTGGTGTCCGAGGATGTGCCGAGGTTGTCCGATGGCGTCCGAGGAGTGTTGCCGATGGTGTCCGGACAAATCAGGCATAGATGGACAGGAAGATTTGAAGCACATCTATGGGACAAGGGTACATGGAACAACATCCGGAACAAGAAAGGGAAAAAAAGGGCATATGATAGTGAAGAGGCTGCTGCTCGTAC...

CDS

Download CDS FASTA

315 bp · TkA08G022110|TK1151|CDS

ATGGATCGCGACCAGGTGGTTGTCCGGGCATGGCCGAGAAGTGCTCGAGTAGGTGTGGATCGCGACCAGGTGGTGTCCGAGGATGTGCCGAGGTTGTCCGATGGCGTCCGAGGAGTGTTGCCGATGGTGTCCGGACAAATCAGGCATAGATGGACAGGAAGATTTGAAGCACATCTATGGGACAAGGGTACATGGAACAACATCCGGAACAAGAAAGGGAAAAAAAGGGCATATGATAGTGAAGAGGCTGCTGCTCGTAC...

Protein

Download Protein FASTA

104 aa · TkA08G022110|TK1151|PROTEIN

MDRDQVVVRAWPRSARVGVDRDQVVSEDVPRLSDGVRGVLPMVSGQIRHRWTGRFEAHLWDKGTWNNIRNKKGKKRAYDSEEAAARTYDLAALNYQWKVFEIDL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G022110`
TK1151 ID	TkA08G022110
OH-1004 ID	LXL04_018179
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	90.900
Protein coverage (%)	TK1151 63.462 / OH-1004 68.750 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G022110

Location Chr08:5575127-5576657 (+)

Description Similar to WRI1: Ethylene-responsive transcription factor WRI1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g54320`	May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity).	Contrapuntal networks of gene expression during Arabidopsis seed filling.2002 · DOI: 10.1105/tpc.000877 WRINKLED1 encodes an AP2/EREB domain protein involved in the control of storage compound biosynthesis in Arabidopsis.2004 · DOI: 10.1111/j.1365-313x.2004.02235.x ACTIVATOR of Spomin::LUC1/WRINKLED1 of Arabidopsis thaliana transactivates sugar-inducible promoters.2005 · DOI: 10.1093/pcp/pci072 A spatiotemporal analysis of enzymatic activities associated with carbon metabolism in wild-type and mutant embryos of Arabidopsis using in situ histochemistry.2006 · DOI: 10.1111/j.1365-313x.2006.02682.x WRI1 is required for seed germination and seedling establishment.2006 · DOI: 10.1104/pp.106.079574 wrinkled1: A novel, low-seed-oil mutant of Arabidopsis with a deficiency in the seed-specific regulation of carbohydrate metabolism.1998 · DOI: 10.1104/pp.118.1.91
`At2g41710`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At1g79700`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At1g16060`	Probably acts as a transcriptional activator.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0389000`	Transcription activator involved in the control of organ size.	A novel AP2-type transcription factor, SMALL ORGAN SIZE1, controls organ size downstream of an auxin signaling pathway.2014 · DOI: 10.1093/pcp/pcu023 SMALL ORGAN SIZE 1 and SMALL ORGAN SIZE 2/DWARF AND LOW-TILLERING Form a Complex to Integrate Auxin and Brassinosteroid Signaling in Rice.2017 · DOI: 10.1016/j.molp.2016.12.013 The RLA1/SMOS1 Transcription Factor Functions with OsBZR1 to Regulate Brassinosteroid Signaling and Rice Architecture.2017 · DOI: 10.1105/tpc.16.00611

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018179 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006109 regulation of carbohydrate metabolic process Biological Process

GO:0006110 regulation of glycolytic process Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006629 lipid metabolic process Biological Process

GO:0007276 gamete generation Biological Process

GO:0008610 lipid biosynthetic process Biological Process

GO:0009744 response to sucrose Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0009908 flower development Biological Process

GO:0010080 regulation of floral meristem growth Biological Process

GO:0010311 lateral root formation Biological Process

KEGG gene cross-reference

ath:AT3G54320

ath:AT4G37750

ath:AT5G10510

ath:AT5G65510

dosa:Os07g0124700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.553

Rank 1 · TkA08G022110 · TK1151

Cytoplasm0.399

Rank 2 · TkA08G022110 · TK1151

Mitochondrion0.064

Rank 3 · TkA08G022110 · TK1151

Cell membrane0.041

Rank 4 · TkA08G022110 · TK1151

Plastid0.040

Rank 5 · TkA08G022110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00847AP248-95 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G022110	`PF00847`	AP2	48	95	7.7e-05	23.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q6X5Y6`	Arabidopsis thaliana	sp\|Q6X5Y6\|WRI1_ARATH Ethylene-responsive transcription factor WRI1	75.900%	Swiss-Prot	Low
`Q8GWK2`	Arabidopsis thaliana	sp\|Q8GWK2\|AP2L4_ARATH AP2-like ethylene-responsive transcription factor At2g41710	72.200%	Swiss-Prot	Low
`A0JPZ8`	Arabidopsis thaliana	sp\|A0JPZ8\|AP2L3_ARATH AP2-like ethylene-responsive transcription factor At1g79700	66.700%	Swiss-Prot	Low
`Q94AN4`	Arabidopsis thaliana	sp\|Q94AN4\|AP2L1_ARATH AP2-like ethylene-responsive transcription factor At1g16060	64.800%	Swiss-Prot	Low
`X5HYT8`	Oryza sativa subsp. japonica	sp\|X5HYT8\|SMOS1_ORYSJ AP2-like ethylene-responsive transcription factor SMOS1	52.300%	Swiss-Prot	High

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