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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G079200
Reference: TK1151 Chr: Chr07 Coordinates: 20703727-20712547 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

5730 bp · TkA07G079200|TK1151|cDNA

CTTGTTGGAAAAATTGGCTACTTTCCCCCCCACCAGGTGACCCATCGCCATCACTTTCCTCAATCAGCCCCACCCATTCCTCTTTCTTAATCCAGATTTGGTGCTATAATCAAGCCCTAGTTTAGCTAATCTGCAGCAAACAAACAATCTTATCTCCCAAATGTTGCCTCAACTGTAATCACCAGATCGGCACTGACATCCTAGTACACACAGACGATTGCTTGCAATTAGTTCACTCGCTGTCCCTTTCTGCTTAAGTA...

CDS

Download CDS FASTA

4968 bp · TkA07G079200|TK1151|CDS

ATGGAAGACGGAGAGGGATCTTCCGAGACGAAGACAAAGACACAGTCTTCAGCTGAGAATGTCAAACCAACAAGAACTGTTATAAAACCAACTGTCTCGTCTTCTTTGAAGGTCTCTGGTTCTACTACTGCAACTACACGAAAAAGGATAGAGCCTAAAAGTGTTTCCAATTCTGCCCCTGCCATTAGAAGGAACAGCACTGGGAGTGTACCTGAAAAACAGCAGCAACTTCCAGTTAAGAAACAGATCGGCAGTAGTGG...

Protein

Download Protein FASTA

1655 aa · TkA07G079200|TK1151|PROTEIN

MEDGEGSSETKTKTQSSAENVKPTRTVIKPTVSSSLKVSGSTTATTRKRIEPKSVSNSAPAIRRNSTGSVPEKQQQLPVKKQIGSSGGGGGLTVGRKTSSSTTEPMRRSLPEVRKSSLPSSPVVRASKGQSSPSLSSSSRNLSTSIDSTASSTTRKSTSKLSSLARSSAVSSGSKSGSLSSSREKMSTASSQRKAATPEFRVSRLIMLPQVETKANDDVRLDLRGHRIHSLNAGLKLSPSLEFVYLRDNLLSSLEGIEIL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G079200
TK1151 IDTkA07G079200
OH-1004 IDLXL04_027622
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)96.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G079200
LocationChr07:20703727-20712547 (+)
DescriptionSimilar to AIR9: 187-kDa microtubule-associated protein AIR9
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g34680 Microtubule-associated protein that may be involved in the maturation of cell plates and proper insertion of cross-walls after cytokinesis. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_027622 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007059 chromosome segregation Biological Process
GO:0009733 response to auxin Biological Process
GO:0010102 lateral root morphogenesis Biological Process
GO:0023052 signaling Biological Process
GO:0045842 positive regulation of mitotic metaphase/anaphase transition Biological Process
GO:0051301 cell division Biological Process
GO:1901970 positive regulation of mitotic sister chromatid separation Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005694 chromosome Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
KEGG gene cross-reference
ath:AT2G34680
lmo:lmo0263
mmu:66385
spo:2543597
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.703
Rank 1 · TkA07G079200 · TK1151
Nucleus0.273
Rank 2 · TkA07G079200 · TK1151
Cell membrane0.120
Rank 3 · TkA07G079200 · TK1151
Mitochondrion0.060
Rank 4 · TkA07G079200 · TK1151
Endoplasmic reticulum0.052
Rank 5 · TkA07G079200 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14580LRR_9214-319 aa
PF13855LRR_8220-273 aa
PF12799LRR_4239-273 aa
PF00560LRR_1240-253 aa
PF23952LRR_EndoS246-338 aa
PF23211LRR_LRWD1258-322 aa
PF13855LRR_8262-319 aa
PF00560LRR_1263-281 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G079200PF14580LRR_92143191.2e-0732.2
TkA07G079200PF13855LRR_82202738.8e-1038.9
TkA07G079200PF12799LRR_42392731.8e-2073.2
TkA07G079200PF00560LRR_12402530.002418.3
TkA07G079200PF23952LRR_EndoS2463380.1113.5
TkA07G079200PF23211LRR_LRWD12583220.003917.6
TkA07G079200PF13855LRR_82623198.8e-1038.9
TkA07G079200PF00560LRR_12632810.002418.3
TkA07G079200PF13516LRR_62642780.006817.1
TkA07G079200PF13516LRR_62842980.006817.1
TkA07G079200PF12799LRR_42853231.8e-2073.2
TkA07G079200PF00560LRR_12862990.002418.3
TkA07G079200PF13516LRR_63073190.006817.1
TkA07G079200PF00560LRR_13083210.002418.3
TkA07G079200PF13855LRR_83273628.8e-1038.9
TkA07G079200PF12799LRR_43283621.8e-2073.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4IIU4Arabidopsis thalianasp|F4IIU4|AIR9_ARATH 187-kDa microtubule-associated protein AIR963.700%Swiss-ProtHigh

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