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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G077460
Reference: TK1151 Chr: Chr07 Coordinates: 20140615-20146559 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3709 bp · TkA07G077460|TK1151|cDNA

AATAATTCTTACAACTAGTTTTGTGGTTAGGTCTTAGTAAGAGCTGGGCTCTTTTATATCCAGAAGAGCAACTCTTTTAGGGGCAGACCGGCAGAGTGAAGTCCTGAACCCCTAGCCACCGATCGAAAACGTCGTCGTAGGGGACATCGCATCGGCGAAATAAGTAACATCGCGACTGTGGCGCGGCTTGCAGAAATCGAAGTAAGAGAGGAGGGAGAGAGAGAGAGAGAGAAAGGGTTTTAGGGTTCCATTGTAGCAAG...

CDS

Download CDS FASTA

3270 bp · TkA07G077460|TK1151|CDS

ATGAGTACGTATAATTACGTTGTCACGGCTCATAAGCCAACGAATGTCACTCATTCCTGCGTCGGCAATTTCACTGGTCCGCAAGAACTCAATCTTATTATCGCGAAATGTACCCGTATCGAGATTCATTTACTTACTCCACAAGGCCTGCAGCCTATGTTGGATGTGCCAATATACGGAAGAATTGCAACTTTAGAACTTTTCCGACCTCACGGTGAAACACAAGACGTTCTGTTTATTGCAACAGAAAGGTACAAGTT...

Protein

Download Protein FASTA

1089 aa · TkA07G077460|TK1151|PROTEIN

MSTYNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIATLELFRPHGETQDVLFIATERYKFCVLQWDAEANEVNTRAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCPKPTIVVLYQDNKDARHVKTYEVSLKDKDFVEGPWSQNNLDNGADLLIPVPPPFCGVLIIGEETIVYCSASAFKAIPIRPSITRAYGR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G077460
TK1151 IDTkA07G077460
OH-1004 IDLXL04_027599
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G077460
LocationChr07:20140615-20146559 (+)
DescriptionSimilar to DDB1: DNA damage-binding protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g05420 Component of light signal transduction machinery.
Regulation and role of Arabidopsis CUL4-DDB1A-DDB2 in maintaining genome integrity upon UV stress.2008 · DOI: 10.1371/journal.pgen.1000093
At4g21100 Component of light signal transduction machinery. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0592400 Required for DNA repair. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_027599 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006281 DNA repair Biological Process
GO:0009585 red, far-red light phototransduction Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0045892 negative regulation of DNA-templated transcription Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0080008 Cul4-RING E3 ubiquitin ligase complex Cellular Component
GO:0003676 nucleic acid binding Molecular Function
GO:0003677 DNA binding Molecular Function
GO:0003684 damaged DNA binding Molecular Function
KEGG gene cross-reference
ath:AT4G05420
ath:AT4G21100
dosa:Os05g0592400
osa:4339794
sly:778355
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.578
Rank 1 · TkA07G077460 · TK1151
Cytoplasm0.444
Rank 2 · TkA07G077460 · TK1151
Lysosome / Vacuole0.075
Rank 3 · TkA07G077460 · TK1151
Endoplasmic reticulum0.060
Rank 4 · TkA07G077460 · TK1151
Golgi apparatus0.060
Rank 5 · TkA07G077460 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10433Beta-prop_RSE1_1st16-344 aa
PF03178CPSF_A264-309 aa
PF23726Beta-prop_RSE1_2nd389-698 aa
PF13672PP2C_2442-525 aa
PF25172Beta-prop_WDR3_2nd458-539 aa
PF06752E_Pc_C460-504 aa
PF10433Beta-prop_RSE1_1st496-517 aa
PF06752E_Pc_C612-686 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G077460PF10433Beta-prop_RSE1_1st163445.4e-82276.3
TkA07G077460PF03178CPSF_A2643098.6e-82275.7
TkA07G077460PF23726Beta-prop_RSE1_2nd3896987.2e-67226.8
TkA07G077460PF13672PP2C_24425250.09313.0
TkA07G077460PF25172Beta-prop_WDR3_2nd4585390.2211.4
TkA07G077460PF06752E_Pc_C4605040.4311.2
TkA07G077460PF10433Beta-prop_RSE1_1st4965175.4e-82276.3
TkA07G077460PF06752E_Pc_C6126860.4311.2
TkA07G077460PF25172Beta-prop_WDR3_2nd6356810.2211.4
TkA07G077460PF03178CPSF_A74610588.6e-82275.7
TkA07G077460PF23726Beta-prop_RSE1_2nd7678607.2e-67226.8
TkA07G077460PF10433Beta-prop_RSE1_1st8089045.4e-82276.3
TkA07G077460PF25172Beta-prop_WDR3_2nd8588920.2211.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M0V3Arabidopsis thalianasp|Q9M0V3|DDB1A_ARATH DNA damage-binding protein 1a88.700%Swiss-ProtHigh
O49552Arabidopsis thalianasp|O49552|DDB1B_ARATH DNA damage-binding protein 1b85.300%Swiss-ProtHigh
Q6L4S0Oryza sativa subsp. japonicasp|Q6L4S0|DDB1_ORYSJ DNA damage-binding protein 182.700%Swiss-ProtHigh

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