RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G074340
Reference: TK1151 Chr: Chr07 Coordinates: 19476883-19481716 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2812 bp · TkA07G074340|TK1151|cDNA

AAAACACATTAAAAATTCTAAACCTTATAAATCCAAATAATTCGAAATTTAAATCCATTAACAACATCATCCATATTCTAAAATATAAATCCTACGATCCAAACACATCCCAATTTTGAGCGGGATGTTGAGAATCCGAAGAACCCTAACCTAAGTCAGTGAATAGAATAGCTGCTGCATCTCCTTCTCGCTTCTCCACTCCCGGCGGATCGCCGATAAGTCTCCTTAGTCCCTACCGCACAGCATCACCTTGGGGCATT...

CDS

Download CDS FASTA

2034 bp · TkA07G074340|TK1151|CDS

ATGGAAAACACTTTCTCTGCTTTTGGTTCATCTACATCCTCTACTCCAACATTCGGAGCATCATCATCATCATCATCATCAACCCCTTCATTTGCATTTACATTTGCATCTTCTTCAACTTCTACACCAGCTTCCTCTGCTCCAACAACCACTTTTGGTTTTGGATCTTCCTCTGTTGCTGCAACCGGCTCTATGTTTGGTGCATCTTCATTTGGTGGATCTGGATTGTTTGGATCAAGCTCTAGTACCACCACCACCAC...

Protein

Download Protein FASTA

677 aa · TkA07G074340|TK1151|PROTEIN

MENTFSAFGSSTSSTPTFGASSSSSSSTPSFAFTFASSSTSTPASSAPTTTFGFGSSSVAATGSMFGASSFGGSGLFGSSSSTTTTTTAATTAATTSLFGSTSAFGTSNIFGASSTAASSSTTTTAVSSPFSSGLFGSASSTPNFSSTSFGASPNLFGSSSSSSAAPSFSNLTGTPSSSSISISSSVTTPPASSSAPGFSPTTFGTNNLFGGSATPASASSSTTTTSNIFGSSSSTLFGASPSITSSSSPAPSFSSFGVP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G074340
TK1151 IDTkA07G074340
OH-1004 IDLXL04_027582
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)78.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G074340
LocationChr07:19476883-19481716 (-)
DescriptionSimilar to NUP62: Nuclear pore complex protein NUP62
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g45000 Nuclear pore complex protein NUP62. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_027582 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000054 ribosomal subunit export from nucleus Biological Process
GO:0006405 RNA export from nucleus Biological Process
GO:0006606 protein import into nucleus Biological Process
GO:0006913 nucleocytoplasmic transport Biological Process
GO:0007080 mitotic metaphase chromosome alignment Biological Process
GO:0007098 centrosome cycle Biological Process
GO:0007100 mitotic centrosome separation Biological Process
GO:0007166 cell surface receptor signaling pathway Biological Process
GO:0007283 spermatogenesis Biological Process
GO:0008285 negative regulation of cell population proliferation Biological Process
GO:0009966 regulation of signal transduction Biological Process
GO:0010930 negative regulation of auxin mediated signaling pathway Biological Process
KEGG gene cross-reference
ath:AT2G45000
hsa:23636
mmu:18226
rno:65274
spo:2542668
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.858
Rank 1 · TkA07G074340 · TK1151
Cytoplasm0.248
Rank 2 · TkA07G074340 · TK1151
Cell membrane0.021
Rank 3 · TkA07G074340 · TK1151
Endoplasmic reticulum0.021
Rank 4 · TkA07G074340 · TK1151
Golgi apparatus0.015
Rank 5 · TkA07G074340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08069Ribosomal_S13_N435-466 aa
PF03961FapA474-570 aa
PF05064Nsp1_C476-573 aa
PF07889DUF1664508-565 aa
PF04136COG3_N524-607 aa
PF01920Prefoldin_2529-617 aa
PF04108ATG17_like533-661 aa
PF19962EAD9538-561 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G074340PF08069Ribosomal_S13_N4354660.08313.7
TkA07G074340PF03961FapA4745700.07313.4
TkA07G074340PF05064Nsp1_C4765738e-2174.7
TkA07G074340PF07889DUF16645085650.3811.5
TkA07G074340PF04136COG3_N5246071.29.8
TkA07G074340PF01920Prefoldin_25296170.6810.6
TkA07G074340PF04108ATG17_like5336610.04414.0
TkA07G074340PF19962EAD95385611.29.7
TkA07G074340PF07889DUF16645766600.3811.5
TkA07G074340PF19962EAD95846101.29.7
TkA07G074340PF03961FapA5896600.07313.4
TkA07G074340PF21623HK_sensor_dom_bact5916200.03613.9
TkA07G074340PF05064Nsp1_C5986138e-2174.7
TkA07G074340PF19962EAD96296421.29.7
TkA07G074340PF04136COG3_N6326611.29.8
TkA07G074340PF08069Ribosomal_S13_N6436730.08313.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8L7F7Arabidopsis thalianasp|Q8L7F7|NUP62_ARATH Nuclear pore complex protein NUP6276.100%Swiss-ProtLow

JBrowse

View in Genome Browser