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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G022290
Reference: TK1151 Chr: Chr07 Coordinates: 6077416-6078815 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1215 bp · TkA07G022290|TK1151|cDNA

ATGTTAAAGTCGGTGGCTAACCGCAGCACCACCGTCACACACAAATCCGAATCATTCTTCTTCTTACTCTTCTCATTTAGATCATCATCGTCGTCTCCAAGAAGTAAATACCACAACTATTACCTCCGAAAAAGAAGAAAATGGCCGCACCCAGTTTACAAATCCCGCTGGCACGAGAAACTAAGCCAACAACACGCCATGCAAGCTCTTCGACAACAAGCTTCTTCATCATCATCATCCGCTAATCTCCTCTCTTCTCT...

CDS

Download CDS FASTA

1215 bp · TkA07G022290|TK1151|CDS

ATGTTAAAGTCGGTGGCTAACCGCAGCACCACCGTCACACACAAATCCGAATCATTCTTCTTCTTACTCTTCTCATTTAGATCATCATCGTCGTCTCCAAGAAGTAAATACCACAACTATTACCTCCGAAAAAGAAGAAAATGGCCGCACCCAGTTTACAAATCCCGCTGGCACGAGAAACTAAGCCAACAACACGCCATGCAAGCTCTTCGACAACAAGCTTCTTCATCATCATCATCCGCTAATCTCCTCTCTTCTCT...

Protein

Download Protein FASTA

404 aa · TkA07G022290|TK1151|PROTEIN

MLKSVANRSTTVTHKSESFFFLLFSFRSSSSSPRSKYHNYYLRKRRKWPHPVYKSRWHEKLSQQHAMQALRQQASSSSSSANLLSSLINSFALYNCDPTPNAYHFVIKTLIKTSQSHYIGSVLYHLEKVEKFETPETIFTDLIEFHGENNEFQEAIDVFFRLPDFRCTPSVDSLNCLLSVLCKRKEGLGVVPQVLLKSRLMNIRLEESTFCILIKALCKFKKPKNAISLLYHMADHEIDIDHGSFSLILSTLCQQFDLER...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G022290
TK1151 IDTkA07G022290
OH-1004 IDLXL04_026976
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)99.700
Protein coverage (%)TK1151 74.505 / OH-1004 61.179
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G022290
LocationChr07:6077416-6078815 (-)
DescriptionSimilar to At2g38420: Pentatricopeptide repeat-containing protein At2g38420, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g38420 Pentatricopeptide repeat-containing protein At2g38420, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026976 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G05670
ath:AT2G38420
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.738
Rank 1 · TkA07G022290 · TK1151
Plastid0.139
Rank 2 · TkA07G022290 · TK1151
Nucleus0.071
Rank 3 · TkA07G022290 · TK1151
Cytoplasm0.030
Rank 4 · TkA07G022290 · TK1151
Cell membrane0.009
Rank 5 · TkA07G022290 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10037MRP-S2754-93 aa
PF12000Glyco_trans_4_355-81 aa
PF29070MSC6_N60-229 aa
PF12854PPR_185-91 aa
PF13041PPR_295-111 aa
PF29978ATP18_TPR97-137 aa
PF13877RPAP3_C109-133 aa
PF23276TPR_24115-187 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G022290PF10037MRP-S2754930.004316.8
TkA07G022290PF12000Glyco_trans_4_355810.1712.4
TkA07G022290PF29070MSC6_N602294.9e-1246.3
TkA07G022290PF12854PPR_185911.1e-1661.0
TkA07G022290PF13041PPR_2951112.2e-38130.8
TkA07G022290PF29978ATP18_TPR971370.05414.1
TkA07G022290PF13877RPAP3_C1091334.98.5
TkA07G022290PF23276TPR_241151879e-1452.2
TkA07G022290PF17177PPR_long1232152.6e-1040.7
TkA07G022290PF20292MC71261620.1612.8
TkA07G022290PF13041PPR_21391832.2e-38130.8
TkA07G022290PF13812PPR_31391836e-2691.0
TkA07G022290PF01535PPR1391653.7e-2174.6
TkA07G022290PF12854PPR_11491591.1e-1661.0
TkA07G022290PF29978ATP18_TPR1501800.05414.1
TkA07G022290PF12854PPR_11671841.1e-1661.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8L6Y7Arabidopsis thalianasp|Q8L6Y7|PP193_ARATH Pentatricopeptide repeat-containing protein At2g38420, mitochondrial44.800%Swiss-ProtMedium

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