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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_026976
Reference: OH-1004 Chr: Chr06 Coordinates: 6414976-6416454 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1479 bp · LXL04_026976|LXL04_026976|OH1004|cDNA

ATGTTAAAGTCGGTGGCTAACCGCAGCACCACCGTCACACACAAATCCGAATCATTCTTCTTCTTACTCTTCTCATTTAGATCATCATCGTCGTCTCCAAGAAGTAAATACCACAACTATTACCTccgaaaaagaagaaaatggCCGCACCCAGTTTACAAATCCCGCTGGCACGAGAAACTAAGCCAACAACACGCCATGCAAGCTCTTCGACAACAAgcttcttcatcatcatcatccgcTAATCTCCTCTCTTCTCT...

CDS

Download CDS FASTA

1479 bp · LXL04_026976|LXL04_026976|OH1004|CDS

ATGTTAAAGTCGGTGGCTAACCGCAGCACCACCGTCACACACAAATCCGAATCATTCTTCTTCTTACTCTTCTCATTTAGATCATCATCGTCGTCTCCAAGAAGTAAATACCACAACTATTACCTCCGAAAAAGAAGAAAATGGCCGCACCCAGTTTACAAATCCCGCTGGCACGAGAAACTAAGCCAACAACACGCCATGCAAGCTCTTCGACAACAAGCTTCTTCATCATCATCATCCGCTAATCTCCTCTCTTCTCT...

Protein

Download Protein FASTA

492 aa · LXL04_026976|LXL04_026976|OH1004|PROTEIN

MLKSVANRSTTVTHKSESFFFLLFSFRSSSSSPRSKYHNYYLRKRRKWPHPVYKSRWHEKLSQQHAMQALRQQASSSSSSANLLSSLINSFALYNCDPTPNAYHFVIKTLIKTSQSHYIGSVLYHLEKVEKFETPETIFTDLIEFHGENNEFQEAIDVFFRLPDFRCTPSVDSLNCLLSVLCKRKEGLGVVPQVLLKSRLMNIRLEESTFCILIKALCRFKKPKNAISLLYHMADHEIDIDHGSFSLILSTLCQQFDLER...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_026976
TK1151 IDTkA07G022290
OH-1004 IDLXL04_026976
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)99.700
Protein coverage (%)TK1151 74.505 / OH-1004 61.179
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_026976
LocationChr06:6414976-6416454 (-)
DescriptionSimilar to At2g38420: Pentatricopeptide repeat-containing protein At2g38420, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g38420 Pentatricopeptide repeat-containing protein At2g38420, mitochondrial. No verified direct reference in this release
At1g05670 Pentatricopeptide repeat-containing protein At1g05670, mitochondrial. No verified direct reference in this release
At1g12775 Pentatricopeptide repeat-containing protein At1g12775, mitochondrial. No verified direct reference in this release
At1g09900 Pentatricopeptide repeat-containing protein At1g09900. No verified direct reference in this release
At1g12620 Pentatricopeptide repeat-containing protein At1g12620. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026976 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G05670
ath:AT2G38420
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.738
Rank 1 · LXL04_026976 · OH-1004
Plastid0.137
Rank 2 · LXL04_026976 · OH-1004
Nucleus0.075
Rank 3 · LXL04_026976 · OH-1004
Cytoplasm0.032
Rank 4 · LXL04_026976 · OH-1004
Cell membrane0.010
Rank 5 · LXL04_026976 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070.1MSC6_N60-229 aa
PF23276.3TPR_24201-303 aa
PF13041.13PPR_2209-254 aa
PF13812.13PPR_3265-321 aa
PF13041.13PPR_2284-324 aa
PF17177.11PPR_long298-399 aa
PF13041.13PPR_2312-361 aa
PF13812.13PPR_3336-394 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_026976PF29070.1MSC6_N602292.8e-1453.7
LXL04_026976PF23276.3TPR_242013031.7e-1764.3
LXL04_026976PF13041.13PPR_22092541e-48163.9
LXL04_026976PF13812.13PPR_32653212.8e-2692.1
LXL04_026976PF13041.13PPR_22843241e-48163.9
LXL04_026976PF17177.11PPR_long2983994.4e-1556.3
LXL04_026976PF13041.13PPR_23123611e-48163.9
LXL04_026976PF13812.13PPR_33363942.8e-2692.1
LXL04_026976PF12854.14PPR_13443766.4e-2380.9
LXL04_026976PF13041.13PPR_23473931e-48163.9
LXL04_026976PF12854.14PPR_13794086.4e-2380.9
LXL04_026976PF13041.13PPR_23824291e-48163.9
LXL04_026976PF13041.13PPR_24214641e-48163.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8L6Y7Arabidopsis thalianaPentatricopeptide repeat-containing protein At2g38420, mitochondrial44.418%Swiss-Protmoderate database homology
Q0WVK7Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g05670, mitochondrial26.549%Swiss-Protweak database homology
Q9LPX2Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g12775, mitochondrial24.930%Swiss-Protweak database homology
Q3EDF8Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g0990026.944%Swiss-Protweak database homology
Q9ASZ8Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g1262026.426%Swiss-Protweak database homology

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