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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G020530
Reference: TK1151 Chr: Chr07 Coordinates: 5545369-5554299 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1248 bp · TkA07G020530|TK1151|cDNA

ATGTCACCGAAGTTACATATCAAAGGCATGAAGAAATCCAAGAAACCAAAGGTATCAAAACGTGAAAATGGGGTCGATATGATCAGTAAGTTGCCAGATGATGTCCTTCAAATGATTATTTCACGTCTTCAAGGTACCGAAGAAGTAGTTCGAACCAGCATTTTGTCTACACGATGGAGATATTTATGGACTTCGGTTCCCTTTATAGACATAGATTTTTCCCGAAGATTGAATCGCAATGAAGAAAACTTCAAAAGGGA...

CDS

Download CDS FASTA

1248 bp · TkA07G020530|TK1151|CDS

ATGTCACCGAAGTTACATATCAAAGGCATGAAGAAATCCAAGAAACCAAAGGTATCAAAACGTGAAAATGGGGTCGATATGATCAGTAAGTTGCCAGATGATGTCCTTCAAATGATTATTTCACGTCTTCAAGGTACCGAAGAAGTAGTTCGAACCAGCATTTTGTCTACACGATGGAGATATTTATGGACTTCGGTTCCCTTTATAGACATAGATTTTTCCCGAAGATTGAATCGCAATGAAGAAAACTTCAAAAGGGA...

Protein

Download Protein FASTA

415 aa · TkA07G020530|TK1151|PROTEIN

MSPKLHIKGMKKSKKPKVSKRENGVDMISKLPDDVLQMIISRLQGTEEVVRTSILSTRWRYLWTSVPFIDIDFSRRLNRNEENFKREILEGFVYRVLENNSLHLETFRLSCASYFNMSIVGQWIETAVRRNVKLLDLMFCPRNQCDDVEVPHCLVTSRFSVLRVLELNRVKLFDGGLVTGFLKCCPLLEDLKLKNLEFSRKVGNLDENFNRRIQISCPKLVFLELTESLKKAVINPSGSLSCLMGGADTICELFEGISYV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G020530
TK1151 IDTkA07G020530
OH-1004 IDLXL04_026954
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)57.400
Protein coverage (%)TK1151 98.313 / OH-1004 94.912
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G020530
LocationChr07:5545369-5554299 (-)
DescriptionSimilar to At3g58880: Putative F-box/LRR-repeat protein At3g58880
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g78750 F-box/FBD/LRR-repeat protein At1g78750. No verified direct reference in this release
At5g56420 F-box/FBD/LRR-repeat protein At5g56420. No verified direct reference in this release
At1g16940 Putative F-box/FBD/LRR-repeat protein At1g16940. No verified direct reference in this release
At1g13570 F-box/FBD/LRR-repeat protein At1g13570. No verified direct reference in this release
At1g78840 Putative F-box/FBD/LRR-repeat protein At1g78840. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026954 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT1G66290
ath:AT1G69630
ath:AT1G78750
ath:AT3G58880
ath:AT5G44950
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.872
Rank 1 · TkA07G020530 · TK1151
Cytoplasm0.185
Rank 2 · TkA07G020530 · TK1151
Cell membrane0.038
Rank 3 · TkA07G020530 · TK1151
Endoplasmic reticulum0.030
Rank 4 · TkA07G020530 · TK1151
Plastid0.014
Rank 5 · TkA07G020530 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23622LRR_At1g61320_AtMIF14-62 aa
PF00646F-box28-68 aa
PF12937F-box-like28-62 aa
PF07723LRR_233-42 aa
PF27290YonD_N75-95 aa
PF08387FBD101-109 aa
PF07723LRR_2101-116 aa
PF23622LRR_At1g61320_AtMIF1102-194 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G020530PF23622LRR_At1g61320_AtMIF14626.7e-0523.2
TkA07G020530PF00646F-box28681.9e-0731.4
TkA07G020530PF12937F-box-like28620.0005520.4
TkA07G020530PF07723LRR_233420.7411.3
TkA07G020530PF27290YonD_N75950.1112.9
TkA07G020530PF08387FBD1011090.02415.2
TkA07G020530PF07723LRR_21011160.7411.3
TkA07G020530PF23622LRR_At1g61320_AtMIF11021946.7e-0523.2
TkA07G020530PF00646F-box1081201.9e-0731.4
TkA07G020530PF27290YonD_N1091260.1112.9
TkA07G020530PF24758LRR_At5g563701222496.4e-0626.7
TkA07G020530PF08387FBD1491570.02415.2
TkA07G020530PF07723LRR_21621860.7411.3
TkA07G020530PF08387FBD2232340.02415.2
TkA07G020530PF00646F-box2702821.9e-0731.4
TkA07G020530PF24758LRR_At5g563702763136.4e-0626.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZV93Arabidopsis thalianasp|Q9ZV93|FDL10_ARATH F-box/FBD/LRR-repeat protein At1g7875027.200%Swiss-ProtLow
Q9FM89Arabidopsis thalianasp|Q9FM89|FDL38_ARATH F-box/FBD/LRR-repeat protein At5g5642033.200%Swiss-ProtLow
Q9FZ53Arabidopsis thalianasp|Q9FZ53|FDL4_ARATH Putative F-box/FBD/LRR-repeat protein At1g1694024.700%Swiss-ProtLow
Q9FZ70Arabidopsis thalianasp|Q9FZ70|FDL1_ARATH F-box/FBD/LRR-repeat protein At1g1357025.800%Swiss-ProtLow
Q9ZVA3Arabidopsis thalianasp|Q9ZVA3|FDL12_ARATH Putative F-box/FBD/LRR-repeat protein At1g7884026.100%Swiss-ProtLow

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