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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G462920
Reference: TK1151 Chr: Chr06 Coordinates: 114578755-114579255 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

501 bp · TkA06G462920|TK1151|cDNA

ATGGGTATGTATATGGGTTTCAAAGACACGGGCATTTCCAAGTATATGCTCTACGTTTGTTTTGTTCTATGTTCCGTTCAGAACATCGTTCTATTTATTTTTCGACTCCTTCGCTTCTTTAATCCGATTCAATCCCACCACAATCACGATCATAAAAAACAACATGAAAACAGTCCTCCGATTTCAGCTGTGTTGACTCGTGAATTCCTCGTAGTAAAAAACTTCAAGGACGTTCATAAGAGGAAAGATTTGTTGCAAAG...

CDS

Download CDS FASTA

501 bp · TkA06G462920|TK1151|CDS

ATGGGTATGTATATGGGTTTCAAAGACACGGGCATTTCCAAGTATATGCTCTACGTTTGTTTTGTTCTATGTTCCGTTCAGAACATCGTTCTATTTATTTTTCGACTCCTTCGCTTCTTTAATCCGATTCAATCCCACCACAATCACGATCATAAAAAACAACATGAAAACAGTCCTCCGATTTCAGCTGTGTTGACTCGTGAATTCCTCGTAGTAAAAAACTTCAAGGACGTTCATAAGAGGAAAGATTTGTTGCAAAG...

Protein

Download Protein FASTA

166 aa · TkA06G462920|TK1151|PROTEIN

MGMYMGFKDTGISKYMLYVCFVLCSVQNIVLFIFRLLRFFNPIQSHHNHDHKKQHENSPPISAVLTREFLVVKNFKDVHKRKDLLQSCAVCLNKFSGDDKIRCLENCNHIFHLDCLDRWMDHDQDTCPICRTPVLPYACKDEYNKRLKVANSLHASCGEDLPIRCL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G462920
TK1151 IDTkA06G462920
OH-1004 IDLXL04_017302
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)63.000
Protein coverage (%)TK1151 92.771 / OH-1004 75.879
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G462920
LocationChr06:114578755-114579255 (+)
DescriptionSimilar to BRH1: Brassinosteroid-responsive RING protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g61460 May be involved in the brassinosteroids (BRs) signaling pathway and regulate the growth and development of rosette leaves.
Characterisation of BRH1, a brassinosteroid-responsive RING-H2 gene from Arabidopsis thaliana.2002 · DOI: 10.1007/s00425-001-0723-z
Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.2018 · DOI: 10.1007/s11427-017-9133-8
At1g04360 RING-H2 finger protein ATL1. No verified direct reference in this release
At5g43420 RING-H2 finger protein ATL16. No verified direct reference in this release
At2g35910 RING-H2 finger protein ATL70. No verified direct reference in this release
At3g16720 May be involved in the early steps of the plant defense signaling pathway. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_017302 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000209 protein polyubiquitination Biological Process
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0009741 response to brassinosteroid Biological Process
GO:0009742 brassinosteroid mediated signaling pathway Biological Process
GO:0010200 response to chitin Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0031669 cellular response to nutrient levels Biological Process
GO:0032418 lysosome localization Biological Process
GO:0034198 cellular response to amino acid starvation Biological Process
GO:0035519 protein K29-linked ubiquitination Biological Process
GO:0045786 negative regulation of cell cycle Biological Process
GO:0051640 organelle localization Biological Process
KEGG gene cross-reference
ath:AT3G61460
ath:AT4G11360
ath:AT4G11370
hsa:26001
mmu:70510
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.278
Rank 1 · TkA06G462920 · TK1151
Endoplasmic reticulum0.268
Rank 2 · TkA06G462920 · TK1151
Lysosome / Vacuole0.260
Rank 3 · TkA06G462920 · TK1151
Cytoplasm0.216
Rank 4 · TkA06G462920 · TK1151
Nucleus0.157
Rank 5 · TkA06G462920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26452DUF813121-53 aa
PF17673DUF553248-93 aa
PF13771zf-HC5HC2H73-116 aa
PF17120zf-RING_1685-128 aa
PF13920zf-C3HC4_386-134 aa
PF22908PHD_NSD86-128 aa
PF27108PHD_Pygo86-116 aa
PF13639zf-RING_287-131 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G462920PF26452DUF813121530.04314.3
TkA06G462920PF17673DUF553248930.02415.4
TkA06G462920PF13771zf-HC5HC2H731160.04514.7
TkA06G462920PF17120zf-RING_16851280.0001422.1
TkA06G462920PF13920zf-C3HC4_3861340.0001522.2
TkA06G462920PF22908PHD_NSD861280.0514.6
TkA06G462920PF27108PHD_Pygo861160.1113.4
TkA06G462920PF13639zf-RING_2871312.2e-1247.8
TkA06G462920PF14446Prok-RING_1871180.02515.5
TkA06G462920PF21202SLX1_C871310.0514.6
TkA06G462920PF23555zf-RING_Vps41871300.07313.4
TkA06G462920PF17123zf-RING_11881168.7e-0832.4
TkA06G462920PF12678zf-rbx1881311.4e-0732.3
TkA06G462920PF12861zf-ANAPC11881328.6e-0729.6
TkA06G462920PF14634zf-RING_5881321.2e-0629.1
TkA06G462920PF13923zf-C3HC4_2881302.2e-0628.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9XF92Arabidopsis thalianasp|Q9XF92|BRH1_ARATH Brassinosteroid-responsive RING protein 139.400%Swiss-ProtMedium
P93823Arabidopsis thalianasp|P93823|ATL1_ARATH RING-H2 finger protein ATL137.100%Swiss-ProtMedium
Q9LSW9Arabidopsis thalianasp|Q9LSW9|ATL16_ARATH RING-H2 finger protein ATL1646.900%Swiss-ProtLow
Q8RX29Arabidopsis thalianasp|Q8RX29|ATL70_ARATH RING-H2 finger protein ATL7039.100%Swiss-ProtLow
Q8L9T5Arabidopsis thalianasp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL246.200%Swiss-ProtLow

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