RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G458170
Reference: TK1151 Chr: Chr06 Coordinates: 113317764-113322087 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1941 bp · TkA06G458170|TK1151|cDNA

CCTCATTTTAGTGAATGTCTCGTTAGTTATTCCATATCTTAAAAGTTCACTCATGGTATTGGCTTCATACATCAAATATTCGGTTCTTGAGAGTCAACATTCAGTTCTTCAAGCAACGCGTGAGGAATTAAATGCAAATTTCTGTAAAAATCATCAAGAATATGTTCAATAATGATCAAGAGTCCCTTCAGATATGAGTTTCTTCAGAGAATTAATCGACAATTTCAGCTCCGTTTTTTCTGATTCCGGTTCGCCATCAA...

CDS

Download CDS FASTA

1464 bp · TkA06G458170|TK1151|CDS

ATGAGTTTCTTCAGAGAATTAATCGACAATTTCAGCTCCGTTTTTTCTGATTCCGGTTCGCCATCAAACACATCAAATCAAAACCCCAGTTCATCGAACAATTATCAAAATCGAGCAGCCATGGATGGAGTGGAGAATGAACGCGCTGCGTATAAGCTTAAAGGATACTTTGATCTGGCAAAAGAAGAGATCGATAAAGCGGTTAGGGCAGAAGAGTGGGGTTTGATTGAGGATGCTATCTTACATTATCAAAACGCTCA...

Protein

Download Protein FASTA

487 aa · TkA06G458170|TK1151|PROTEIN

MSFFRELIDNFSSVFSDSGSPSNTSNQNPSSSNNYQNRAAMDGVENERAAYKLKGYFDLAKEEIDKAVRAEEWGLIEDAILHYQNAQRILGEAIATPVPSYISSREQEKVKSYRQKISKWQGQVSERLRTLNNRSGGTSIIKTTSPRLQSAPVSPSKPNSIKTASQKSAPNLRGSMSNKTINSKPVVQESNGGLDPKLVEMINSVIVDRSQSVKWEDIAGLEKAKQALLEMVILPTKRKDLFTGLRRPAKGLLLFGPPGT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA06G458170
TK1151 IDTkA06G458170
OH-1004 IDLXL04_022720
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G458170
LocationChr06:113317764-113322087 (-)
DescriptionSimilar to FIGNL1: Fidgetin-like protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022720 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000281 mitotic cytokinesis Biological Process
GO:0001578 microtubule bundle formation Biological Process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Biological Process
GO:0007140 male meiotic nuclear division Biological Process
GO:0010458 exit from mitosis Biological Process
GO:0010569 regulation of double-strand break repair via homologous recombination Biological Process
GO:0031117 positive regulation of microtubule depolymerization Biological Process
GO:0031468 nuclear membrane reassembly Biological Process
GO:0032467 positive regulation of cytokinesis Biological Process
GO:0032506 cytokinetic process Biological Process
GO:0033687 osteoblast proliferation Biological Process
GO:0034214 protein hexamerization Biological Process
KEGG gene cross-reference
gga:421481
hsa:63979
xla:446560
xla:446598
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.626
Rank 1 · TkA06G458170 · TK1151
Nucleus0.229
Rank 2 · TkA06G458170 · TK1151
Cell membrane0.109
Rank 3 · TkA06G458170 · TK1151
Golgi apparatus0.105
Rank 4 · TkA06G458170 · TK1151
Peroxisome0.093
Rank 5 · TkA06G458170 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04212MIT59-119 aa
PF01078Mg_chelatase105-119 aa
PF13245AAA_19160-216 aa
PF05673DUF815207-316 aa
PF00493MCM215-324 aa
PF13481AAA_25235-270 aa
PF13191AAA_16241-377 aa
PF12775AAA_7247-281 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G458170PF04212MIT591190.003118.3
TkA06G458170PF01078Mg_chelatase1051190.001718.5
TkA06G458170PF13245AAA_191602160.09313.6
TkA06G458170PF05673DUF8152073160.0006619.6
TkA06G458170PF00493MCM2153240.00218.0
TkA06G458170PF13481AAA_252352700.0004320.7
TkA06G458170PF13191AAA_162413772.5e-0525.6
TkA06G458170PF12775AAA_72472810.02714.7
TkA06G458170PF25199nSTAND_NTPase52473230.1312.8
TkA06G458170PF05496RuvB_N2483221.6e-0525.4
TkA06G458170PF06068TIP492483000.0002521.0
TkA06G458170PF13401AAA_222492913.1e-0525.0
TkA06G458170PF01695IstB_IS212492740.01415.6
TkA06G458170PF13245AAA_192492870.09313.6
TkA06G458170PF00625Guanylate_kin2502870.04914.0
TkA06G458170PF24883NPHP3_N2513650.0001422.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser