Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1464 bp · LXL04_022720|LXL04_022720|OH1004|cDNA
ATGAGTTTCTTCAGAGAATTAATCGACAATTTCAGCTCCGTTTTTTCTGATTCCGGTTCGCCATCAAACACATCAAATCAAAACCCCAGTTCATCGAACAATTATCAAAATCGAGCAGCCATGGATGGAGTGGAGAATGAACGCGCTGCGTATAAGCTTAAAGGATACTTTGATCTGGCAAAAGAAGAGATCGATAAAGCGGTTAGGGCAGAAGAGTGGGGTTTGATTGAGGATGCTATCTTACATTATCAAAACGCTCA...
1464 bp · LXL04_022720|LXL04_022720|OH1004|CDS
ATGAGTTTCTTCAGAGAATTAATCGACAATTTCAGCTCCGTTTTTTCTGATTCCGGTTCGCCATCAAACACATCAAATCAAAACCCCAGTTCATCGAACAATTATCAAAATCGAGCAGCCATGGATGGAGTGGAGAATGAACGCGCTGCGTATAAGCTTAAAGGATACTTTGATCTGGCAAAAGAAGAGATCGATAAAGCGGTTAGGGCAGAAGAGTGGGGTTTGATTGAGGATGCTATCTTACATTATCAAAACGCTCA...
Protein
Download Protein FASTA487 aa · LXL04_022720|LXL04_022720|OH1004|PROTEIN
MSFFRELIDNFSSVFSDSGSPSNTSNQNPSSSNNYQNRAAMDGVENERAAYKLKGYFDLAKEEIDKAVRAEEWGLIEDAILHYQNAQRILGEAIATPVPSYISSREQEKVKSYRQKISKWQGQVSERLRTLNNRSGGTSIIKTTSPRLQSAPVSPSKPISIKTASQKSAPNLRGSMSNKTINSKPVVQESNGGLDPKLVEMINSVIVDRSQSVKWEDIAGLEKAKQALLEMVILPTKRKDLFTGLRRPAKGLLLFGPPGT...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_022720 |
|---|---|
| TK1151 ID | TkA06G458170 |
| OH-1004 ID | LXL04_022720 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.800 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_022720 |
|---|---|
| Location | Chr05:6761216-6765069 (+) |
| Description | Similar to FIGNL1: Fidgetin-like protein 1 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000281 mitotic cytokinesis Biological Process GO:0001578 microtubule bundle formation Biological Process GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Biological Process GO:0007140 male meiotic nuclear division Biological Process GO:0010458 exit from mitosis Biological Process GO:0010569 regulation of double-strand break repair via homologous recombination Biological Process GO:0031117 positive regulation of microtubule depolymerization Biological Process GO:0031468 nuclear membrane reassembly Biological Process GO:0032467 positive regulation of cytokinesis Biological Process GO:0032506 cytokinetic process Biological Process GO:0033687 osteoblast proliferation Biological Process GO:0034214 protein hexamerization Biological Process |
| KEGG gene cross-reference | gga:421481 hsa:63979 xla:446560 xla:446598 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00004.36AAA252-382 aaPF07728.21AAA_5252-373 aaPF17862.8AAA_lid_3407-440 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_022720 | PF00004.36 | AAA | 252 | 382 | 4.2e-42 | 144.4 |
| LXL04_022720 | PF07728.21 | AAA_5 | 252 | 373 | 7.2e-06 | 26.8 |
| LXL04_022720 | PF17862.8 | AAA_lid_3 | 407 | 440 | 4.4e-13 | 49.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.