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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G363440
Reference: TK1151 Chr: Chr06 Coordinates: 89993768-89997946 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1708 bp · TkA06G363440|TK1151|cDNA

TTTGACTTGGATTTGAAGAAACGAACTGTTGTTAGCATATTCTATAGGAGGAAAGCTGTTTAGGGTCAAATTGCAGCATTTAGGCACCACTACCTAACCTTCTTCCGTTCATCGTATCACCCTCCCCAAGCCTTCAACGCAAAAGTTCCCCGCCCCACATACAATCTCAGCTTTCATCGTATACTCTTCATCTTCAATTTGTAGTCCCACCTACCAATTTTTCATGACTTGGTTTGTGTCGCCCTCGAATTCTTTCGATT...

CDS

Download CDS FASTA

1029 bp · TkA06G363440|TK1151|CDS

ATGAGTTCGTTAGTGGGTTCATCAGTTTTACCGCTCAATTCGCGGAATGTATCTTTTCTCTCCACTGGTTATTGTAAATCTCGCAACAAAATTGACACTTCATCGATCTACACAAGGAGAGTTGTCTGTTGTTGTATGGCTCCACAGAATTTAAAGCCCGCTGATGAATTTCGTCCCTCCAAATTCAACCAGGATTCGTCTTTGAATTTGTTTACAGAGGATTTGGACGAGACCGATGTTCTTCTACAGTGTAAAGATGT...

Protein

Download Protein FASTA

342 aa · TkA06G363440|TK1151|PROTEIN

MSSLVGSSVLPLNSRNVSFLSTGYCKSRNKIDTSSIYTRRVVCCCMAPQNLKPADEFRPSKFNQDSSLNLFTEDLDETDVLLQCKDVYKSFGEKQILRGVNFKIKYGEAVGIIGPSGTGKSTILKIIAGLLTPDKGEVYIRGRKRLGLISDDDMSGLRIGLVFQSAALFDSLTVRENVGFLLYEHSRMPKDEIQELVAETLAAVGLKDVEDRMPSELSGGMKKRVALARSIIYDTTNNTIEPEVLLYDEPTAGLDPIAST...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G363440
TK1151 IDTkA06G363440
OH-1004 IDLXL04_023342
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G363440
LocationChr06:89993768-89997946 (+)
DescriptionSimilar to TGD3: Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g65410 ATPase transporter involved in lipid transfer from the endoplasmic reticulum (ER) to plastids, and necessary for thylakoids formation.
A small ATPase protein of Arabidopsis, TGD3, involved in chloroplast lipid import.2007 · DOI: 10.1074/jbc.m704063200
Disruption of Nap14, a plastid-localized non-intrinsic ABC protein in Arabidopsis thaliana results in the over-accumulation of transition metals and in aberrant chloroplast structures.2010 · DOI: 10.1111/j.1365-3040.2010.02124.x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_023342 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006869 lipid transport Biological Process
GO:0070508 cholesterol import Biological Process
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009536 plastid Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0016887 ATP hydrolysis activity Molecular Function
KEGG gene cross-reference
ath:AT1G65410
mbo:BQ2027_MB0674
mle:ML1892
mtc:MT0684
mtu:Rv0655
mtv:RVBD_0655
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.977
Rank 1 · TkA06G363440 · TK1151
Mitochondrion0.037
Rank 2 · TkA06G363440 · TK1151
Cytoplasm0.018
Rank 3 · TkA06G363440 · TK1151
Nucleus0.015
Rank 4 · TkA06G363440 · TK1151
Peroxisome0.012
Rank 5 · TkA06G363440 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02224Cytidylate_kin31-72 aa
PF20703nSTAND191-132 aa
PF00005ABC_tran97-252 aa
PF13555AAA_29102-135 aa
PF13476AAA_23102-135 aa
PF03193RsgA_GTPase104-131 aa
PF25199nSTAND_NTPase5108-148 aa
PF13191AAA_16108-134 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G363440PF02224Cytidylate_kin31720.1712.3
TkA06G363440PF20703nSTAND1911320.2111.9
TkA06G363440PF00005ABC_tran972522.4e-31109.9
TkA06G363440PF13555AAA_291021359.3e-0522.8
TkA06G363440PF13476AAA_231021350.007517.6
TkA06G363440PF03193RsgA_GTPase1041310.1812.3
TkA06G363440PF25199nSTAND_NTPase51081480.005217.3
TkA06G363440PF13191AAA_161081340.08114.2
TkA06G363440PF02463SMC_N1092670.0314.5
TkA06G363440PF13238AAA_181101300.1912.9
TkA06G363440PF13304AAA_211111400.0001822.3
TkA06G363440PF13604AAA_301111380.1113.0
TkA06G363440PF13175AAA_151111340.1212.6
TkA06G363440PF02224Cytidylate_kin1111300.1712.3
TkA06G363440PF13521AAA_281111290.2912.0
TkA06G363440PF07728AAA_51121370.08313.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9AT00Arabidopsis thalianasp|Q9AT00|TGD3_ARATH Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic81.200%Swiss-ProtHigh

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