RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G185800
Reference: TK1151 Chr: Chr06 Coordinates: 48465033-48466826 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1671 bp · TkA06G185800|TK1151|cDNA

ATGAACTGGTTCAGAGGATCGGCGTCTTCAACGTGGAATTTTTCCAATACTACTAGAGGATTCATCTGCAGCTTCTATGGCGTCACCTGCTGGAACGATCAGGAGAATCGTGTAATTACGCTCACACTTCGGGACGCTGGACTTGCCGGACCAGTTCCTTCGGATTTACAGTCCTGTCGGAGCTTACAGAACCTGGATCTCTCGGGTAATAGTCTAACTGGTTCTATTCCTAGTGAAATTTGTACCTGGCTGCCTTATCT...

CDS

Download CDS FASTA

1671 bp · TkA06G185800|TK1151|CDS

ATGAACTGGTTCAGAGGATCGGCGTCTTCAACGTGGAATTTTTCCAATACTACTAGAGGATTCATCTGCAGCTTCTATGGCGTCACCTGCTGGAACGATCAGGAGAATCGTGTAATTACGCTCACACTTCGGGACGCTGGACTTGCCGGACCAGTTCCTTCGGATTTACAGTCCTGTCGGAGCTTACAGAACCTGGATCTCTCGGGTAATAGTCTAACTGGTTCTATTCCTAGTGAAATTTGTACCTGGCTGCCTTATCT...

Protein

Download Protein FASTA

556 aa · TkA06G185800|TK1151|PROTEIN

MNWFRGSASSTWNFSNTTRGFICSFYGVTCWNDQENRVITLTLRDAGLAGPVPSDLQSCRSLQNLDLSGNSLTGSIPSEICTWLPYLVSLDLSNNEFTGEIPASLGNCSFLNSLVLSGNKLSGSIPAQFSNLGRLNKFSVADNDLSGSIPSRLSNFDSSSFDGNNGLCGEPLTKCGSLSKKNLVIIIAAGVLGAVGSLLLGFGLWWWCSTKSMKKRRNGIDRDDDSSSWADRLRAYKLVQVSLFQKPLVKVKVVDLMMAT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA06G185800
TK1151 IDTkA06G185800
OH-1004 IDLXL04_024037
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.800
Protein coverage (%)TK1151 99.101 / OH-1004 92.295
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G185800
LocationChr06:48465033-48466826 (-)
DescriptionSimilar to BIR2: Inactive LRR receptor-like serine/threonine-protein kinase BIR2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g28450 Pseudokinases lacking protein kinase activity and unable to bind ATP-analogs.
Structure of the pseudokinase domain of BIR2, a regulator of BAK1-mediated immune signaling in Arabidopsis.2014 · DOI: 10.1016/j.jsb.2014.02.005
At1g27190 Probable inactive receptor kinase At1g27190. No verified direct reference in this release
At1g69990 Probable LRR receptor-like serine/threonine-protein kinase At1g69990. No verified direct reference in this release
At5g48380 Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380. No verified direct reference in this release
At3g13380 Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates.
BRL1 and BRL3 are novel brassinosteroid receptors that function in vascular differentiation in Arabidopsis.2004 · DOI: 10.1242/dev.01403

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024037 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006952 defense response Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009416 response to light stimulus Biological Process
GO:0009626 plant-type hypersensitive response Biological Process
GO:0009729 detection of brassinosteroid stimulus Biological Process
GO:0009742 brassinosteroid mediated signaling pathway Biological Process
GO:0009755 hormone-mediated signaling pathway Biological Process
GO:0009791 post-embryonic development Biological Process
GO:0031348 negative regulation of defense response Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0045088 regulation of innate immune response Biological Process
GO:1900150 regulation of defense response to fungus Biological Process
KEGG gene cross-reference
ath:AT1G27190
ath:AT1G55610
ath:AT1G69990
ath:AT3G28450
ath:AT5G48380
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.870
Rank 1 · TkA06G185800 · TK1151
Cytoplasm0.075
Rank 2 · TkA06G185800 · TK1151
Endoplasmic reticulum0.073
Rank 3 · TkA06G185800 · TK1151
Nucleus0.058
Rank 4 · TkA06G185800 · TK1151
Lysosome / Vacuole0.022
Rank 5 · TkA06G185800 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00560LRR_139-59 aa
PF24758LRR_At5g5637048-120 aa
PF13855LRR_853-72 aa
PF13516LRR_659-74 aa
PF13855LRR_860-121 aa
PF00560LRR_161-82 aa
PF12799LRR_461-95 aa
PF13855LRR_885-145 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G185800PF00560LRR_139591.7e-1554.5
TkA06G185800PF24758LRR_At5g56370481200.1312.6
TkA06G185800PF13855LRR_853725.6e-0936.4
TkA06G185800PF13516LRR_659740.001219.4
TkA06G185800PF13855LRR_8601215.6e-0936.4
TkA06G185800PF00560LRR_161821.7e-1554.5
TkA06G185800PF12799LRR_461954.7e-0833.7
TkA06G185800PF13855LRR_8851455.6e-0936.4
TkA06G185800PF13516LRR_6851000.001219.4
TkA06G185800PF00560LRR_1871081.7e-1554.5
TkA06G185800PF13516LRR_61081230.001219.4
TkA06G185800PF00560LRR_11111321.7e-1554.5
TkA06G185800PF12799LRR_41111474.7e-0833.7
TkA06G185800PF00560LRR_11351561.7e-1554.5
TkA06G185800PF13516LRR_61371470.001219.4
TkA06G185800PF13855LRR_81521675.6e-0936.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LSI9Arabidopsis thalianasp|Q9LSI9|BIR2_ARATH Inactive LRR receptor-like serine/threonine-protein kinase BIR261.500%Swiss-ProtHigh
O04567Arabidopsis thalianasp|O04567|Y1719_ARATH Probable inactive receptor kinase At1g2719058.900%Swiss-ProtHigh
C0LGI5Arabidopsis thalianasp|C0LGI5|Y1699_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g6999054.800%Swiss-ProtHigh
Q9ASS4Arabidopsis thalianasp|Q9ASS4|Y5838_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At5g4838044.400%Swiss-ProtMedium
Q9LJF3Arabidopsis thalianasp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 336.600%Swiss-ProtMedium

JBrowse

View in Genome Browser