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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G147240
Reference: TK1151 Chr: Chr06 Coordinates: 38651391-38653364 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1363 bp · TkA06G147240|TK1151|cDNA

GTTTTTATCACAGTACTTGTCATAAGACAAGAGGAAAAATACAAACTTTGTTATAAAATTTGAAGGAGCGGTGGCAGCCATATGAGCTGCGACAGACAGGGAACTCTGATGTGAAAACAATGGAGATCCTCCTCTTCTTTTGAACCACCAACTTCGTCTTCTAATTTCTCTGTCTCCTATTTGCTACGATTCGAATTTGATGCTGTGTGTACTGTTTATCGCTCTAAACCAATGCGATGATTGCGGTAGGAAATGGGTCG...

CDS

Download CDS FASTA

903 bp · TkA06G147240|TK1151|CDS

ATGATTGCGGTAGGAAATGGGTCGCTGATTTTCAGTTCCCCCCTGGGGTGTAATCTCTTCGAAGCCCAATCAACGAAGGTAGGGTTCGTGAACTTCCCGGCAACGACGCTCAATTGCCGTCGGAGCTTGTCGTCAACGTTGACGAACTTAGCGCCTATCAAAGCAAATGGGGGATCGCGAATGTCTTCGTTAAAATCCGGTATTGAAGTCAATTCGAATGAAAGAGCTATCATCAACAATTCGGATGATTCGAGTGTAGG...

Protein

Download Protein FASTA

300 aa · TkA06G147240|TK1151|PROTEIN

MIAVGNGSLIFSSPLGCNLFEAQSTKVGFVNFPATTLNCRRSLSSTLTNLAPIKANGGSRMSSLKSGIEVNSNERAIINNSDDSSVGSVRHEISTKGKRSTNIVWHKCSVEKIDRQELLQQKGCVIWITGLSGSGKSTLACALTRGLHSGGKLTYVLDGDNVRHGLNRDLTFKPEDRAENIRRIGEVAKLFSDAGIICIASVISPYRSDRDAIRSMLPDGDFIEVFMDTPLGVCEARDPKGLYKLARAGKIKGFTGVDDP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G147240
TK1151 IDTkA06G147240
OH-1004 IDLXL04_024399
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G147240
LocationChr06:38651391-38653364 (-)
DescriptionSimilar to APK1: Adenylyl-sulfate kinase 1, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g14750 Catalyzes the synthesis of activated sulfate.
Molecular and catalytic properties of Arabidopsis thaliana adenylyl sulfate (APS)-kinase.2001 · DOI: 10.1006/abbi.2001.2453
At4g39940 Catalyzes the synthesis of activated sulfate.
Molecular and catalytic properties of Arabidopsis thaliana adenylyl sulfate (APS)-kinase.2001 · DOI: 10.1006/abbi.2001.2453
Disruption of adenosine-5'-phosphosulfate kinase in Arabidopsis reduces levels of sulfated secondary metabolites.2009 · DOI: 10.1105/tpc.109.065581
Adenosine-5'-phosphosulfate kinase is essential for Arabidopsis viability.2010 · DOI: 10.1016/j.febslet.2009.11.014
Interaction of glucosinolate content of Arabidopsis thaliana mutant lines and feeding and oviposition by generalist and specialist lepidopterans.2013 · DOI: 10.1016/j.phytochem.2012.11.006
At5g67520 Catalyzes the phosphorylation of adenosine 5'-phosphosulfate to 3'-phosphoadenylyl sulfate, which is the activated sulfate form for sulfation reactions.
Adenosine-5'-phosphosulfate kinase is essential for Arabidopsis viability.2010 · DOI: 10.1016/j.febslet.2009.11.014
At3g03900 Catalyzes the synthesis of activated sulfate for the sulfation of secondary metabolites, including the glucosinolates.
Adenosine-5'-phosphosulfate kinase is essential for Arabidopsis viability.2010 · DOI: 10.1016/j.febslet.2009.11.014

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024399 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000103 sulfate assimilation Biological Process
GO:0016310 phosphorylation Biological Process
GO:0019344 L-cysteine biosynthetic process Biological Process
GO:0070814 hydrogen sulfide biosynthetic process Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009536 plastid Cellular Component
GO:0004020 adenylylsulfate kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0042802 identical protein binding Molecular Function
KEGG gene cross-reference
ath:AT2G14750
ath:AT3G03900
ath:AT4G39940
ath:AT5G67520
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.945
Rank 1 · TkA06G147240 · TK1151
Mitochondrion0.075
Rank 2 · TkA06G147240 · TK1151
Cytoplasm0.036
Rank 3 · TkA06G147240 · TK1151
Nucleus0.034
Rank 4 · TkA06G147240 · TK1151
Peroxisome0.015
Rank 5 · TkA06G147240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19422Ariadne42-119 aa
PF01656CbiA45-73 aa
PF13476AAA_2378-107 aa
PF03193RsgA_GTPase107-145 aa
PF18766SWI2_SNF2111-191 aa
PF20720nSTAND3116-156 aa
PF00437T2SSE116-143 aa
PF24883NPHP3_N117-152 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G147240PF19422Ariadne421190.09813.2
TkA06G147240PF01656CbiA45730.001918.8
TkA06G147240PF13476AAA_23781070.06614.6
TkA06G147240PF03193RsgA_GTPase1071450.212.1
TkA06G147240PF18766SWI2_SNF21111910.1812.2
TkA06G147240PF20720nSTAND31161560.001119.4
TkA06G147240PF00437T2SSE1161430.1911.1
TkA06G147240PF24883NPHP3_N1171520.002219.0
TkA06G147240PF13555AAA_291201490.001119.4
TkA06G147240PF00005ABC_tran1211550.001419.9
TkA06G147240PF01583APS_kinase1222713e-69232.6
TkA06G147240PF13481AAA_251221530.1512.4
TkA06G147240PF13191AAA_161231640.03215.5
TkA06G147240PF03308MeaB1231560.05913.1
TkA06G147240PF13671AAA_331252375.8e-0627.4
TkA06G147240PF05729NACHT1251510.03114.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q43295Arabidopsis thalianasp|Q43295|APK1_ARATH Adenylyl-sulfate kinase 1, chloroplastic77.100%Swiss-ProtHigh
O49196Arabidopsis thalianasp|O49196|APK2_ARATH Adenylyl-sulfate kinase 2, chloroplastic61.300%Swiss-ProtHigh
Q84JF0Arabidopsis thalianasp|Q84JF0|APK4_ARATH Adenylyl-sulfate kinase 4, chloroplastic65.400%Swiss-ProtHigh
Q9SRW7Arabidopsis thalianasp|Q9SRW7|APK3_ARATH Adenylyl-sulfate kinase 369.900%Swiss-ProtMedium

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