LXL04_024399 | RubberDandelionOmics

Gene overview

LXL04_024399

Reference: OH-1004 Chr: Chr05 Coordinates: 89658957-89660356 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

903 bp · LXL04_024399|LXL04_024399|OH1004|cDNA

ATGATTGCGGTAGGAAATGGGTCGCTGATTTTCAGTTCCCCCCTGGGGTGTAATCTCTTCGAAGCCCAATCAACGAAGGTAGGGTTCGTGAACTTCCCGGCAACGACGCTCAATTGCCGTCGGAGCTTGACGTCAACGTTGACGAACTTAGCGCCTATCAAAGCAAATGGGGGATCGCGAATGTCTTCGTTAAAATCCGGTATTGAAGTCAATTCGAATGAAAGAGCTATCATCAACAATTCGGATGATTCGAGTGGTAG...

CDS

Download CDS FASTA

903 bp · LXL04_024399|LXL04_024399|OH1004|CDS

ATGATTGCGGTAGGAAATGGGTCGCTGATTTTCAGTTCCCCCCTGGGGTGTAATCTCTTCGAAGCCCAATCAACGAAGGTAGGGTTCGTGAACTTCCCGGCAACGACGCTCAATTGCCGTCGGAGCTTGACGTCAACGTTGACGAACTTAGCGCCTATCAAAGCAAATGGGGGATCGCGAATGTCTTCGTTAAAATCCGGTATTGAAGTCAATTCGAATGAAAGAGCTATCATCAACAATTCGGATGATTCGAGTGGTAG...

Protein

Download Protein FASTA

300 aa · LXL04_024399|LXL04_024399|OH1004|PROTEIN

MIAVGNGSLIFSSPLGCNLFEAQSTKVGFVNFPATTLNCRRSLTSTLTNLAPIKANGGSRMSSLKSGIEVNSNERAIINNSDDSSGSSVRHEISTKGKRSTNIVWHKCSVEKIDRQELLQQKGCVIWITGLSGSGKSTLACALTRGLHSGGKLTYVLDGDNVRHGLNRDLTFKPEDRAENIRRIGEVAKLFSDAGIICIASVISPYRSDRDAIRSMLPDGDFIEVFMDTPLGVCEARDPKGLYKLARAGKIKGFTGVDDP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024399`
TK1151 ID	TkA06G147240
OH-1004 ID	LXL04_024399
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_024399

Location Chr05:89658957-89660356 (+)

Description Similar to APK1: Adenylyl-sulfate kinase 1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g14750`	Catalyzes the synthesis of activated sulfate.	Molecular and catalytic properties of Arabidopsis thaliana adenylyl sulfate (APS)-kinase.2001 · DOI: 10.1006/abbi.2001.2453
`At4g39940`	Catalyzes the synthesis of activated sulfate.	Molecular and catalytic properties of Arabidopsis thaliana adenylyl sulfate (APS)-kinase.2001 · DOI: 10.1006/abbi.2001.2453 Disruption of adenosine-5'-phosphosulfate kinase in Arabidopsis reduces levels of sulfated secondary metabolites.2009 · DOI: 10.1105/tpc.109.065581 Adenosine-5'-phosphosulfate kinase is essential for Arabidopsis viability.2010 · DOI: 10.1016/j.febslet.2009.11.014 Interaction of glucosinolate content of Arabidopsis thaliana mutant lines and feeding and oviposition by generalist and specialist lepidopterans.2013 · DOI: 10.1016/j.phytochem.2012.11.006
`At5g67520`	Catalyzes the phosphorylation of adenosine 5'-phosphosulfate to 3'-phosphoadenylyl sulfate, which is the activated sulfate form for sulfation reactions.	Adenosine-5'-phosphosulfate kinase is essential for Arabidopsis viability.2010 · DOI: 10.1016/j.febslet.2009.11.014
`At3g03900`	Catalyzes the synthesis of activated sulfate for the sulfation of secondary metabolites, including the glucosinolates.	Adenosine-5'-phosphosulfate kinase is essential for Arabidopsis viability.2010 · DOI: 10.1016/j.febslet.2009.11.014

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024399 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000103 sulfate assimilation Biological Process

GO:0016310 phosphorylation Biological Process

GO:0019344 L-cysteine biosynthetic process Biological Process

GO:0070814 hydrogen sulfide biosynthetic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0004020 adenylylsulfate kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0042802 identical protein binding Molecular Function

KEGG gene cross-reference

ath:AT2G14750

ath:AT3G03900

ath:AT4G39940

ath:AT5G67520

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.944

Rank 1 · LXL04_024399 · OH-1004

Mitochondrion0.074

Rank 2 · LXL04_024399 · OH-1004

Cytoplasm0.036

Rank 3 · LXL04_024399 · OH-1004

Nucleus0.034

Rank 4 · LXL04_024399 · OH-1004

Peroxisome0.016

Rank 5 · LXL04_024399 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01583.27APS_kinase122-271 aa

PF13671.13AAA_33125-237 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024399	`PF01583.27`	APS_kinase	122	271	2.8e-69	232.7
LXL04_024399	`PF13671.13`	AAA_33	125	237	5.9e-06	27.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q43295`	Arabidopsis thaliana	Adenylyl-sulfate kinase 1, chloroplastic	78.846%	Swiss-Prot	moderate database homology
`O49196`	Arabidopsis thaliana	Adenylyl-sulfate kinase 2, chloroplastic	60.584%	Swiss-Prot	strong database homology
`Q84JF0`	Arabidopsis thaliana	Adenylyl-sulfate kinase 4, chloroplastic	65.236%	Swiss-Prot	strong database homology
`Q9SRW7`	Arabidopsis thaliana	Adenylyl-sulfate kinase 3	69.565%	Swiss-Prot	moderate database homology

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