TkA06G083830 | RubberDandelionOmics

Gene overview

TkA06G083830

Reference: TK1151 Chr: Chr06 Coordinates: 22405185-22409034 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1987 bp · TkA06G083830|TK1151|cDNA

GTCGGGGTTTCCAACTACAAACAGGCGAGTGCGTATAAATAACAGAGCGGCGGAGAACTACGAGATCCGGCGGTGGTGGAAATGCGTAATCGCGATTTCGTGGATGGCGTTCGTCAACTCTCCCAAATTCAACGCCCTTTGCGTATATTAAACAAGAACCAGTCCGTAGTCAACGTATCCGTACTTTTCATGATTGGTGGTTCTTCTTCTGTTCTTCTCTCTGTAGCTAATGTTTTCTGCAAAAGAAGACTCGTGTTGAT...

CDS

Download CDS FASTA

837 bp · TkA06G083830|TK1151|CDS

ATGCTTGGCAAGGAATTTTTCACCGAGTACGGTGAAGCAAGTCTGTATGAGATTCAAGAAGTTGTTGGAAAAGGAAGTTACGGCGTTGTTGCAGCTGCAGTCGACACGCACACCGGTGAAAAAGTAGCCATTAAAAAAATCAACGATGTTTTCGAGCATGTTTCCGATGCGACCCGTATTCTTAGAGAAATCAAACTTCTCCGACTTCTTAAACACCCAGATATCGTAGAAATTAAGCATATCATGCTTCCTCCTTGCAG...

Protein

Download Protein FASTA

278 aa · TkA06G083830|TK1151|PROTEIN

MLGKEFFTEYGEASLYEIQEVVGKGSYGVVAAAVDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLKHPDIVEIKHIMLPPCRREFKDIYVVFELMESDLDEVIKVNDDLTPEHHQFFLYQLLRALKYIHTAHVFHRDLKPKNILANADCKLKICDFGLARASFDDTPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGKPLFPGRNVVHQLDLVTDLLGSPSPEIISRIRNDKARRYLNG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G083830`
TK1151 ID	TkA06G083830
OH-1004 ID	LXL04_014939
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	84.600
Protein coverage (%)	TK1151 98.201 / OH-1004 56.639 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G083830

Location Chr06:22405185-22409034 (+)

Description Similar to MPK9: Mitogen-activated protein kinase 9

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g18040`	Mitogen-activated protein kinase 9.	No verified direct reference in this release
`At1g18150`	MKK3-MPK8 and CAMs-MPK8 modules negatively regulates ROS accumulation through controlling expression of the RBOHD gene during wounding.	Calmodulin-dependent activation of MAP kinase for ROS homeostasis in Arabidopsis.2011 · DOI: 10.1016/j.molcel.2011.02.029

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0643800`	Mitogen-activated protein kinase 16.	No verified direct reference in this release
`Os05g0143500`	Mitogen-activated protein kinase 14.	No verified direct reference in this release
`Os11g0271100`	Mitogen-activated protein kinase 15.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014939 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000302 response to reactive oxygen species Biological Process

GO:0007165 signal transduction Biological Process

GO:0009611 response to wounding Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0042542 response to hydrogen peroxide Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G18150

ath:AT1G73670

ath:AT3G18040

dosa:Os05g0576800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.606

Rank 1 · TkA06G083830 · TK1151

Nucleus0.558

Rank 2 · TkA06G083830 · TK1151

Cell membrane0.050

Rank 3 · TkA06G083830 · TK1151

Mitochondrion0.045

Rank 4 · TkA06G083830 · TK1151

Endoplasmic reticulum0.030

Rank 5 · TkA06G083830 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase16-229 aa

PF07714PK_Tyr_Ser-Thr17-228 aa

PF03109ABC121-47 aa

PF06293Kdo49-159 aa

PF01163RIO188-162 aa

PF12330Haspin_kinase93-179 aa

PF14531Kinase-like102-210 aa

PF03109ABC1130-166 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G083830	`PF00069`	Pkinase	16	229	3.8e-59	200.9
TkA06G083830	`PF07714`	PK_Tyr_Ser-Thr	17	228	4.5e-31	108.8
TkA06G083830	`PF03109`	ABC1	21	47	0.00061	19.7
TkA06G083830	`PF06293`	Kdo	49	159	4.4e-06	27.0
TkA06G083830	`PF01163`	RIO1	88	162	0.024	15.0
TkA06G083830	`PF12330`	Haspin_kinase	93	179	0.00012	22.0
TkA06G083830	`PF14531`	Kinase-like	102	210	0.0072	16.3
TkA06G083830	`PF03109`	ABC1	130	166	0.00061	19.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LV37`	Arabidopsis thaliana	sp\|Q9LV37\|MPK9_ARATH Mitogen-activated protein kinase 9	84.600%	Swiss-Prot	High
`Q9LM33`	Arabidopsis thaliana	sp\|Q9LM33\|MPK8_ARATH Mitogen-activated protein kinase 8	84.800%	Swiss-Prot	High
`Q5VP69`	Oryza sativa subsp. japonica	sp\|Q5VP69\|MPK16_ORYSJ Mitogen-activated protein kinase 16	85.600%	Swiss-Prot	High
`Q75KK8`	Oryza sativa subsp. japonica	sp\|Q75KK8\|MPK14_ORYSJ Mitogen-activated protein kinase 14	84.100%	Swiss-Prot	High
`Q53N72`	Oryza sativa subsp. japonica	sp\|Q53N72\|MPK15_ORYSJ Mitogen-activated protein kinase 15	84.100%	Swiss-Prot	High

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