LXL04_014939 | RubberDandelionOmics

Gene overview

LXL04_014939

Reference: OH-1004 Chr: Chr03 Coordinates: 60010287-60013528 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1449 bp · LXL04_014939|LXL04_014939|OH1004|cDNA

ATGGGAATTTCAACATTCGTGGATGAGATTCTTTGGAGGTTTCAACGACATAATCATCTGTCTTCTTCTGTTACTTCCACTAACCCCAATCCCGTTGTTCTGAATCCCGATTATGAACCCAAACCATCGTCATCATTATCCACAATTGTTCAAGGGTTCCATCTTCCTGCACTTGAGAATACCAGAGTTCCAAAACGCATCGCTTTCCCACCAATGGATCCTATGAAAAGGGTCTCTATCTTTTGCAGATCTTCTATCAT...

CDS

Download CDS FASTA

1449 bp · LXL04_014939|LXL04_014939|OH1004|CDS

ATGGGAATTTCAACATTCGTGGATGAGATTCTTTGGAGGTTTCAACGACATAATCATCTGTCTTCTTCTGTTACTTCCACTAACCCCAATCCCGTTGTTCTGAATCCCGATTATGAACCCAAACCATCGTCATCATTATCCACAATTGTTCAAGGGTTCCATCTTCCTGCACTTGAGAATACCAGAGTTCCAAAACGCATCGCTTTCCCACCAATGGATCCTATGAAAAGGGTCTCTATCTTTTGCAGATCTTCTATCAT...

Protein

Download Protein FASTA

482 aa · LXL04_014939|LXL04_014939|OH1004|PROTEIN

MGISTFVDEILWRFQRHNHLSSSVTSTNPNPVVLNPDYEPKPSSSLSTIVQGFHLPALENTRVPKRIAFPPMDPMKRVSIFCRSSIISIDDSFLEREFFTEYGEAGRYEVQEVVGKGSYGVVGSATDKHTGDRVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIRANDDLTPEHYQFFLYQLLRGLKYIHSANVFHRDLKPKNILANADCKLKICDFGLARVSF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014939`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_014939

Location Chr03:60010287-60013528 (+)

Description Similar to MPK9: Mitogen-activated protein kinase 9

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g18040`	Mitogen-activated protein kinase 9.	No verified direct reference in this release
`At1g73670`	Mitogen-activated protein kinase 15.	No verified direct reference in this release
`At1g18150`	MKK3-MPK8 and CAMs-MPK8 modules negatively regulates ROS accumulation through controlling expression of the RBOHD gene during wounding.	Calmodulin-dependent activation of MAP kinase for ROS homeostasis in Arabidopsis.2011 · DOI: 10.1016/j.molcel.2011.02.029

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0576800`	Mitogen-activated protein kinase 17.	No verified direct reference in this release
`Os05g0143500`	Mitogen-activated protein kinase 14.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014939 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000302 response to reactive oxygen species Biological Process

GO:0007165 signal transduction Biological Process

GO:0009611 response to wounding Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0042542 response to hydrogen peroxide Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G18150

ath:AT1G73670

ath:AT3G18040

dosa:Os05g0576800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.615

Rank 1 · LXL04_014939 · OH-1004

Nucleus0.444

Rank 2 · LXL04_014939 · OH-1004

Cell membrane0.092

Rank 3 · LXL04_014939 · OH-1004

Endoplasmic reticulum0.045

Rank 4 · LXL04_014939 · OH-1004

Mitochondrion0.043

Rank 5 · LXL04_014939 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase108-399 aa

PF07714.24PK_Tyr_Ser-Thr109-324 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014939	`PF00069.32`	Pkinase	108	399	3.7e-66	223.9
LXL04_014939	`PF07714.24`	PK_Tyr_Ser-Thr	109	324	9.4e-32	111.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LV37`	Arabidopsis thaliana	Mitogen-activated protein kinase 9	86.398%	Swiss-Prot	strong database homology
`Q9C9U4`	Arabidopsis thaliana	Mitogen-activated protein kinase 15	86.290%	Swiss-Prot	strong database homology
`Q9LM33`	Arabidopsis thaliana	Mitogen-activated protein kinase 8	81.667%	Swiss-Prot	strong database homology
`Q6L5F7`	Oryza sativa subsp. japonica	Mitogen-activated protein kinase 17	76.728%	Swiss-Prot	strong database homology
`Q75KK8`	Oryza sativa subsp. japonica	Mitogen-activated protein kinase 14	83.871%	Swiss-Prot	strong database homology

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