TkA06G073230 | RubberDandelionOmics

Gene overview

TkA06G073230

Reference: TK1151 Chr: Chr06 Coordinates: 19635130-19637524 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1637 bp · TkA06G073230|TK1151|cDNA

GAATTTGGTTACAGATTTGTGATTATTTAAAAAGACGGTAGACAATAAAACGCTTGACACTCCGAGAATCCTCACTCAGAAGTCACTTCTTTTCAACTCCCGAGGTCTACCCCGCTAACGTACACTGGTGGAGGGTACAGTACGCACCCAACAACCCTCCACTGTCAAAGGAGATCACACGCAGCTTTATCACCCACCCTCTCTCTCTTTCTCTCTCTCTCTATACATACACTTATCAGAATCTACATCTCTCTTTTTCT...

CDS

Download CDS FASTA

849 bp · TkA06G073230|TK1151|CDS

ATGGATCCGCCAATGATGATGAATGGAGGTGGTTTTCGGTCAAGTAATACGGGATCGTCGTTGTGTAATTTGCCTGAGATCTGGCCCTTTCAGATAAATCTAGGCGGTGGCAGCGGCAATGCGGCGTCGTTTGGTATGGGGCAATTGGGGGATAATACCAGTGGAAGTGGTGTGTTTTTGGATAATCGAGATCATGTGGCGGTGGATGATCCGATGGTTGTGGACCAGAGAGGGAATAGTAATCAGAGTAAGAAACGACG...

Protein

Download Protein FASTA

282 aa · TkA06G073230|TK1151|PROTEIN

MDPPMMMNGGGFRSSNTGSSLCNLPEIWPFQINLGGGSGNAASFGMGQLGDNTSGSGVFLDNRDHVAVDDPMVVDQRGNSNQSKKRREDDDSSKGVSTSSRSNGNSMLDSDGKRLKSLALETESESKPEPERSSGKKAENNAKPSDPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQQQVEFLSMKLEAVTSRSHPSPQGFTSKDYGQQTFEMTGVPFGSQPTRE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G073230`
TK1151 ID	TkA06G073230
OH-1004 ID	LXL04_025229
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G073230

Location Chr06:19635130-19637524 (-)

Description Similar to BHLH094: Transcription factor BHLH094

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g62610`	Transcription factor bHLH79.	No verified direct reference in this release
`At1g59640`	Involved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size.	No verified direct reference in this release
`At5g48560`	Transcription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity).	Multiple bHLH proteins form heterodimers to mediate CRY2-dependent regulation of flowering-time in Arabidopsis.2013 · DOI: 10.1371/journal.pgen.1003861

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0193800`	Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes.	No verified direct reference in this release
`Os03g0802900`	Transcription factor that may regulate jasmonate-regulated genes.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025229 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009637 response to blue light Biological Process

GO:0048446 petal morphogenesis Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0046983 protein dimerization activity Molecular Function

KEGG gene cross-reference

ath:AT1G59640

ath:AT5G48560

ath:AT5G62610

dosa:Os03g0802900

dosa:Os07g0193800

osa:4334471

osa:4342637

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.981

Rank 1 · TkA06G073230 · TK1151

Cytoplasm0.081

Rank 2 · TkA06G073230 · TK1151

Cell membrane0.025

Rank 3 · TkA06G073230 · TK1151

Endoplasmic reticulum0.013

Rank 4 · TkA06G073230 · TK1151

Plastid0.010

Rank 5 · TkA06G073230 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02590SPOUT_MTase79-122 aa

PF12722Hid180-182 aa

PF02590SPOUT_MTase126-180 aa

PF23177bHLH_IRO3164-223 aa

PF00010HLH165-212 aa

PF23173bHLH_SAC51170-214 aa

PF23174bHLH_ILI175-224 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G073230	`PF02590`	SPOUT_MTase	79	122	0.33	11.7
TkA06G073230	`PF12722`	Hid1	80	182	1.3	7.9
TkA06G073230	`PF02590`	SPOUT_MTase	126	180	0.33	11.7
TkA06G073230	`PF23177`	bHLH_IRO3	164	223	0.016	16.3
TkA06G073230	`PF00010`	HLH	165	212	2.6e-09	37.4
TkA06G073230	`PF23173`	bHLH_SAC51	170	214	8.3e-09	36.0
TkA06G073230	`PF23174`	bHLH_ILI	175	224	0.00082	20.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LV17`	Arabidopsis thaliana	sp\|Q9LV17\|BH079_ARATH Transcription factor bHLH79	45.700%	Swiss-Prot	Medium
`Q0JXE7`	Arabidopsis thaliana	sp\|Q0JXE7\|BPE_ARATH Transcription factor BPE	49.000%	Swiss-Prot	Medium
`Q9FJL4`	Arabidopsis thaliana	sp\|Q9FJL4\|BH078_ARATH Transcription factor bHLH78	75.500%	Swiss-Prot	Low
`Q69WS3`	Oryza sativa subsp. japonica	sp\|Q69WS3\|BH094_ORYSJ Transcription factor BHLH094	72.200%	Swiss-Prot	Medium
`Q84T08`	Oryza sativa subsp. japonica	sp\|Q84T08\|BH089_ORYSJ Transcription factor BHLH089	68.000%	Swiss-Prot	Medium

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