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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G054510
Reference: TK1151 Chr: Chr06 Coordinates: 14744926-14748499 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2053 bp · TkA06G054510|TK1151|cDNA

GCTCCATTGCCATATATACTCCCTACACAAACATACGCAATCACACACCTAGGGTTTGCAGCGACTCGATCCACGACAGGGAAACAACGAAGAACAATGAGAGGAGCTTACTATACGTTTTACCAGAGAGCTTCCCATGCATTTCGTGATCATCCTAATCTCTCTAAACTTGTCGTGGTCTGCACCATCAGTGGTGGTGGACTAGCAGCCTATTCTGATGTGAGGCCATTTGGAACCGCTTATGCTGATGCAGCCCAACC...

CDS

Download CDS FASTA

1839 bp · TkA06G054510|TK1151|CDS

GCTCCATTGCCATATATACTCCCTACACAAACATACGCAATCACACACCTAGGGTTTGCAGCGACTCGATCCACGACAGGGAAACAACGAAGAACAATGAGAGGAGCTTACTATACGTTTTACCAGAGAGCTTCCCATGCATTTCGTGATCATCCTAATCTCTCTAAACTTGTCGTGGTCTGCACCATCAGTGGTGGTGGACTAGCAGCCTATTCTGATGTGAGGCCATTTGGAACCGCTTATGCTGATGCAGCCCAACC...

Protein

Download Protein FASTA

612 aa · TkA06G054510|TK1151|PROTEIN

APLPYILPTQTYAITHLGFAATRSTTGKQRRTMRGAYYTFYQRASHAFRDHPNLSKLVVVCTISGGGLAAYSDVRPFGTAYADAAQPTIKKKKVVVLGTGWAGTSFLKNLKDPSFDVEVVSPCNYFAFTPLLPSVTVGTVEARSVVEPIRNIVKKNNLDFSFKEAECFKIDTANKKVHCKSNNILGAKEEFTVDYDELVIAMGARANTFNTPGVVENAHFLKEVEDALRIRRSIIDCFERASLPSVSEDERKRILHFVVV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G054510
TK1151 IDTkA06G054510
OH-1004 IDLXL04_034616
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)70.900
Protein coverage (%)TK1151 93.137 / OH-1004 52.773
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G054510
LocationChr06:14744926-14748499 (-)
DescriptionSimilar to NDB2: External alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g05020 Alternative NADH-ubiquinone oxidoreductase which catalyzes the oxidation of mitochondrial NADH does not translocate protons across the inner mitochondrial membrane (By similarity).
Ca2+-binding and Ca2+-independent respiratory NADH and NADPH dehydrogenases of Arabidopsis thaliana.2007 · DOI: 10.1074/jbc.m704674200
At4g21490 Alternative NADH-ubiquinone oxidoreductase which catalyzes the oxidation of mitochondrial NADH does not translocate protons across the inner mitochondrial membrane. No verified direct reference in this release
At2g20800 Alternative NADH-ubiquinone oxidoreductase which catalyzes the oxidation of mitochondrial NADH does not translocate protons across the inner mitochondrial membrane (By similarity).
Ca2+-binding and Ca2+-independent respiratory NADH and NADPH dehydrogenases of Arabidopsis thaliana.2007 · DOI: 10.1074/jbc.m704674200
Alterations in the mitochondrial alternative NAD(P)H Dehydrogenase NDB4 lead to changes in mitochondrial electron transport chain composition, plant growth and response to oxidative stress.2011 · DOI: 10.1093/pcp/pcr073

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_034616 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
GO:0005743 mitochondrial inner membrane Cellular Component
GO:0005758 mitochondrial intermembrane space Cellular Component
GO:0005777 peroxisome Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0031314 extrinsic component of mitochondrial inner membrane Cellular Component
GO:0003954 NADH dehydrogenase activity Molecular Function
GO:0005509 calcium ion binding Molecular Function
GO:0009916 alternative oxidase activity Molecular Function
GO:0016491 oxidoreductase activity Molecular Function
GO:0120555 NADH dehydrogenase (ubiquinone) (non-electrogenic) activity Molecular Function
KEGG gene cross-reference
ath:AT2G20800
ath:AT4G05020
ath:AT4G21490
sot:102591773
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.925
Rank 1 · TkA06G054510 · TK1151
Cytoplasm0.089
Rank 2 · TkA06G054510 · TK1151
Nucleus0.062
Rank 3 · TkA06G054510 · TK1151
Cell membrane0.049
Rank 4 · TkA06G054510 · TK1151
Endoplasmic reticulum0.029
Rank 5 · TkA06G054510 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13241NAD_binding_789-124 aa
PF07991KARI_N89-119 aa
PF13738Pyr_redox_390-183 aa
PF07992Pyr_redox_292-410 aa
PF00070Pyr_redox93-121 aa
PF13454NAD_binding_995-113 aa
PF13450NAD_binding_896-120 aa
PF13454NAD_binding_9188-203 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G054510PF13241NAD_binding_7891240.03515.4
TkA06G054510PF07991KARI_N891190.1412.5
TkA06G054510PF13738Pyr_redox_3901830.09812.6
TkA06G054510PF07992Pyr_redox_2924103.5e-56191.5
TkA06G054510PF00070Pyr_redox931214.1e-1247.1
TkA06G054510PF13454NAD_binding_9951130.09113.5
TkA06G054510PF13450NAD_binding_8961200.001519.4
TkA06G054510PF13454NAD_binding_91882030.09113.5
TkA06G054510PF00036EF-hand_11922020.0001122.2
TkA06G054510PF00070Pyr_redox2563374.1e-1247.1
TkA06G054510PF13241NAD_binding_72562680.03515.4
TkA06G054510PF13454NAD_binding_92583160.09113.5
TkA06G054510PF13738Pyr_redox_32582790.09812.6
TkA06G054510PF13450NAD_binding_82593290.001519.4
TkA06G054510PF13450NAD_binding_83503760.001519.4
TkA06G054510PF05517p25-alpha4044480.1712.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q94BV7Arabidopsis thalianasp|Q94BV7|NDB2_ARATH External alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial68.700%Swiss-ProtHigh
F4JJJ3Arabidopsis thalianasp|F4JJJ3|NDB3_ARATH External alternative NAD(P)H-ubiquinone oxidoreductase B3, mitochondrial67.800%Swiss-ProtHigh
Q9SKT7Arabidopsis thalianasp|Q9SKT7|NDB4_ARATH External alternative NAD(P)H-ubiquinone oxidoreductase B4, mitochondrial66.500%Swiss-ProtHigh

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