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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G043580
Reference: TK1151 Chr: Chr06 Coordinates: 11788412-11798913 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2550 bp · TkA06G043580|TK1151|cDNA

GAGGATCCATACATGAAATTACATAACAAATACCGTAAAAAGAATTAGATTATACCGAAAAAGCTGAAATTAAACTTTTTTAAAACTTGTACAAATAAGTTTCAGTACAAACATTTTGTTTTACAAAATTTGACATGTACTTATCCATTCGACCCATCTGCATCACATAACCCTACCAGAGTATCGGGTAATCTCCGCATCACGTAACCCACATATCATTAGACCAAATTCCCAATTCGGATCGCAATCTCCGAACCCTA...

CDS

Download CDS FASTA

2157 bp · TkA06G043580|TK1151|CDS

ATGAAGCGTTCTACCGATGACCTAGGTGAGAAATTGCAGGCAAAGAAACCCGTGTTTCTCACTAAAGCAGAGCGAGAACAATTAGCCCTCAAGCGCCGTCAGGATGAATTTGAAGAACAGAAGCGCAAATCCGAACAGCTTCTTCTCCAGAGTAACCCTAATTCTTCCTCCTCTAAACCCCCTCAGTCGTCCGATGACGCTTCCCGTAACCACCGGTCTTCTCGTGATTACGATCGCGACCGTGACCGTGATCGCCGTGA...

Protein

Download Protein FASTA

718 aa · TkA06G043580|TK1151|PROTEIN

MKRSTDDLGEKLQAKKPVFLTKAEREQLALKRRQDEFEEQKRKSEQLLLQSNPNSSSSKPPQSSDDASRNHRSSRDYDRDRDRDRRDRDRDRDRDRERERERERERERERDSERRNRDRERDEEHKARERARLEKLAEREREKELDAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNVLYQNPHEARLLFGRGFRAGMDRREQKKLAAKNEKELRDEIRKKDGIEERPEEAAAQRLKEEAADMYDTFDMRV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA06G043580
TK1151 IDTkA06G043580
OH-1004 IDLXL04_025707
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G043580
LocationChr06:11788412-11798913 (+)
DescriptionSimilar to RH21: DEAD-box ATP-dependent RNA helicase 21
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g33730 ATP-dependent RNA helicase involved in mRNA splicing. No verified direct reference in this release
At1g28180 Putative DEAD-box ATP-dependent RNA helicase 44. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0708600 ATP-dependent RNA helicase involved in mRNA splicing. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025707 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000244 spliceosomal tri-snRNP complex assembly Biological Process
GO:0000354 cis assembly of pre-catalytic spliceosome Biological Process
GO:0000375 RNA splicing, via transesterification reactions Biological Process
GO:0000387 spliceosomal snRNP assembly Biological Process
GO:0000388 spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) Biological Process
GO:0000398 mRNA splicing, via spliceosome Biological Process
GO:0008380 RNA splicing Biological Process
GO:0035196 miRNA processing Biological Process
GO:0062176 R-loop processing Biological Process
GO:0000785 chromatin Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
KEGG gene cross-reference
ath:AT2G33730
dosa:Os03g0708600
hsa:9416
osa:4333866
pon:100172249
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.935
Rank 1 · TkA06G043580 · TK1151
Cytoplasm0.173
Rank 2 · TkA06G043580 · TK1151
Cell membrane0.019
Rank 3 · TkA06G043580 · TK1151
Mitochondrion0.014
Rank 4 · TkA06G043580 · TK1151
Endoplasmic reticulum0.011
Rank 5 · TkA06G043580 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28671UMP28-71 aa
PF25430DDX2325-42 aa
PF25430DDX2393-121 aa
PF21090P-loop_SecA121-121 aa
PF28671UMP2126-148 aa
PF25430DDX23171-254 aa
PF25430DDX23260-281 aa
PF00270DEAD322-512 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G043580PF28671UMP28710.2412.3
TkA06G043580PF25430DDX2325425.8e-2279.1
TkA06G043580PF25430DDX23931215.8e-2279.1
TkA06G043580PF21090P-loop_SecA1211210.02215.1
TkA06G043580PF28671UMP21261480.2412.3
TkA06G043580PF25430DDX231712545.8e-2279.1
TkA06G043580PF25430DDX232602815.8e-2279.1
TkA06G043580PF00270DEAD3225127.9e-49166.3
TkA06G043580PF04851ResIII3334621.2e-0526.0
TkA06G043580PF00271Helicase_C3704186.8e-36123.6
TkA06G043580PF31015ATAD2_C4264580.004717.3
TkA06G043580PF21090P-loop_SecA5406270.02215.1
TkA06G043580PF00271Helicase_C5486566.8e-36123.6
TkA06G043580PF00270DEAD5506187.9e-49166.3
TkA06G043580PF31015ATAD2_C5515640.004717.3
TkA06G043580PF04851ResIII5625831.2e-0526.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P93008Arabidopsis thalianasp|P93008|RH21_ARATH DEAD-box ATP-dependent RNA helicase 2187.800%Swiss-ProtHigh
Q9FZ92Arabidopsis thalianasp|Q9FZ92|RH44_ARATH Putative DEAD-box ATP-dependent RNA helicase 4465.900%Swiss-ProtHigh
Q53RK8Oryza sativa subsp. japonicasp|Q53RK8|RH21_ORYSJ DEAD-box ATP-dependent RNA helicase 2184.700%Swiss-ProtHigh

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