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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G027880
Reference: TK1151 Chr: Chr06 Coordinates: 7536102-7537970 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1383 bp · TkA06G027880|TK1151|cDNA

CACAAACCCAAAATGTTTCACAATACTAGCACCAAGTTAGCTACCATCTAGGTTACCTTATCCTCTATATAAAACTTTGATATTGTCTATCTAATCAACATCTCAAAAACCAAACGACATTTCACTAACTCCACGAAAAACCATAAAAATGTCGAAGAGTAGAATTCTAGTTGTGGGTGGCACAGGGTACATTGGCAAGAGGATTGTAAAGGCTAGTTTGGCTCAAGGCCACCCTACTTTTGTCCTTAAGCGTCCAGAAA...

CDS

Download CDS FASTA

939 bp · TkA06G027880|TK1151|CDS

ATGTCGAAGAGTAGAATTCTAGTTGTGGGTGGCACAGGGTACATTGGCAAGAGGATTGTAAAGGCTAGTTTGGCTCAAGGCCACCCTACTTTTGTCCTTAAGCGTCCAGAAATCGGTTACGATGTTGAAAAGCTTCAGAAATTGTTATCATTTAAGGAAAAAGGAGCTCGATTGATCGATGGTTCGTTTTCCGATCATCAGTCTCTTGTGGATGCAGTCAAACAAGTTGATGTCGTGATATGCACTATGTCGGGGGTTCA...

Protein

Download Protein FASTA

312 aa · TkA06G027880|TK1151|PROTEIN

MSKSRILVVGGTGYIGKRIVKASLAQGHPTFVLKRPEIGYDVEKLQKLLSFKEKGARLIDGSFSDHQSLVDAVKQVDVVICTMSGVQLRSHNILLQLKLVDAIKEAGNIKRFLPSEFGIDPAQMENGLEYGRETFDDKMVVRKAIEEAKIPYTYVSANCFGGYFVGNLSQTYTLVPPKDQVFIYGDGNHKAVFMDEDDVATYTVKTVDDPRTFNKTLYLRPYENILTHIQLVEKWEKLSGKLLQKVHISAQDFFDSMEDL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G027880
TK1151 IDTkA06G027880
OH-1004 IDLXL04_026094
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G027880
LocationChr06:7536102-7537970 (+)
DescriptionSimilar to Isoflavone reductase homolog
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g32100 Reductase involved in lignan biosynthesis.
Characterization of Arabidopsis thaliana pinoresinol reductase, a new type of enzyme involved in lignan biosynthesis.2008 · DOI: 10.1074/jbc.m801131200
Pinoresinol reductase 1 impacts lignin distribution during secondary cell wall biosynthesis in Arabidopsis.2015 · DOI: 10.1016/j.phytochem.2014.07.008

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026094 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009807 lignan biosynthetic process Biological Process
GO:0019336 phenol-containing compound catabolic process Biological Process
GO:0034312 diol biosynthetic process Biological Process
GO:0042537 benzene-containing compound metabolic process Biological Process
GO:0046189 phenol-containing compound biosynthetic process Biological Process
GO:0046273 lignan catabolic process Biological Process
GO:1901502 ether catabolic process Biological Process
GO:1902123 (-)-pinoresinol catabolic process Biological Process
GO:1902125 (+)-pinoresinol catabolic process Biological Process
GO:1902128 (-)-lariciresinol catabolic process Biological Process
GO:1902129 (-)-lariciresinol biosynthetic process Biological Process
GO:1902132 (+)-lariciresinol biosynthetic process Biological Process
KEGG gene cross-reference
ag:ABM68630
ath:AT1G32100
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.577
Rank 1 · TkA06G027880 · TK1151
Endoplasmic reticulum0.182
Rank 2 · TkA06G027880 · TK1151
Nucleus0.145
Rank 3 · TkA06G027880 · TK1151
Lysosome / Vacuole0.079
Rank 4 · TkA06G027880 · TK1151
Cell membrane0.074
Rank 5 · TkA06G027880 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05368NmrA3-308 aa
PF01118Semialdhyde_dh5-83 aa
PF01262AlaDh_PNT_C5-104 aa
PF01370Epimerase6-113 aa
PF00106adh_short6-77 aa
PF08659KR6-85 aa
PF02719Polysacc_synt_26-80 aa
PF010733Beta_HSD7-91 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G027880PF05368NmrA33083.1e-66224.7
TkA06G027880PF01118Semialdhyde_dh5830.1313.4
TkA06G027880PF01262AlaDh_PNT_C51040.2311.5
TkA06G027880PF01370Epimerase61134.1e-1143.5
TkA06G027880PF00106adh_short6770.06913.3
TkA06G027880PF08659KR6850.09713.3
TkA06G027880PF02719Polysacc_synt_26800.211.5
TkA06G027880PF010733Beta_HSD7912.1e-0524.4
TkA06G027880PF16363GDP_Man_Dehyd7780.0001222.4
TkA06G027880PF13460NAD_binding_10101601.5e-1455.0
TkA06G027880PF22660RS_preATP-grasp-like54940.02615.6
TkA06G027880PF18708MapZ_C21131670.03315.1
TkA06G027880PF01370Epimerase1792124.1e-1143.5
TkA06G027880PF22660RS_preATP-grasp-like1882080.02615.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FVQ6Arabidopsis thalianasp|Q9FVQ6|PILR1_ARATH Pinoresinol reductase 159.300%Swiss-ProtHigh

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