LXL04_026094 | RubberDandelionOmics

Gene overview

LXL04_026094

Reference: OH-1004 Chr: Chr05 Coordinates: 120774845-120776275 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

945 bp · LXL04_026094|LXL04_026094|OH1004|cDNA

ATAAAAATGTCGAAGAATAGAATTCTAGTTGTGGGTGGCACAGGGTACATTGGCAAGAGGATTGTAAAGGCTAGTTTGGCTCAAGGCCACCCTACTTTTGTCCTTAAGCGTCCAGAAATCGGTTACGATGTTGAAAAGCTTCAGAAATTGTTATCATTTAAGGAAAAAGGAGCTCGATTGATCGATGGTTCGTTTTCCGATCATCAGTCTCTTGTGGATGCAGTCAAACAAGTTGATGTCGTGATATGCACTATGTCGGG...

CDS

Download CDS FASTA

939 bp · LXL04_026094|LXL04_026094|OH1004|CDS

ATGTCGAAGAATAGAATTCTAGTTGTGGGTGGCACAGGGTACATTGGCAAGAGGATTGTAAAGGCTAGTTTGGCTCAAGGCCACCCTACTTTTGTCCTTAAGCGTCCAGAAATCGGTTACGATGTTGAAAAGCTTCAGAAATTGTTATCATTTAAGGAAAAAGGAGCTCGATTGATCGATGGTTCGTTTTCCGATCATCAGTCTCTTGTGGATGCAGTCAAACAAGTTGATGTCGTGATATGCACTATGTCGGGGGTTCA...

Protein

Download Protein FASTA

312 aa · LXL04_026094|LXL04_026094|OH1004|PROTEIN

MSKNRILVVGGTGYIGKRIVKASLAQGHPTFVLKRPEIGYDVEKLQKLLSFKEKGARLIDGSFSDHQSLVDAVKQVDVVICTMSGVQLRSHNILLQLKLVDAIKEAGNIKRFLPSEFGIDPAQMENGLEYGRETFDDKMVVRKAIEEAKIPYTYVSANCFGGYFVGNLSQTYTLVPPKDQVFIYGDGNHKAVFMDEDDVATYTVKTVDDPRTFNKTLYLRPYENILTHIQLVEKWEKLSGKLLQKVHISAQDFFDSMEDL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026094`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_026094

Location Chr05:120774845-120776275 (-)

Description Similar to Isoflavone reductase homolog

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g32100`	Reductase involved in lignan biosynthesis.	Characterization of Arabidopsis thaliana pinoresinol reductase, a new type of enzyme involved in lignan biosynthesis.2008 · DOI: 10.1074/jbc.m801131200 Pinoresinol reductase 1 impacts lignin distribution during secondary cell wall biosynthesis in Arabidopsis.2015 · DOI: 10.1016/j.phytochem.2014.07.008

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026094 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009807 lignan biosynthetic process Biological Process

GO:0019336 phenol-containing compound catabolic process Biological Process

GO:0034312 diol biosynthetic process Biological Process

GO:0042537 benzene-containing compound metabolic process Biological Process

GO:0046189 phenol-containing compound biosynthetic process Biological Process

GO:0046273 lignan catabolic process Biological Process

GO:1901502 ether catabolic process Biological Process

GO:1902123 (-)-pinoresinol catabolic process Biological Process

GO:1902125 (+)-pinoresinol catabolic process Biological Process

GO:1902128 (-)-lariciresinol catabolic process Biological Process

GO:1902129 (-)-lariciresinol biosynthetic process Biological Process

GO:1902132 (+)-lariciresinol biosynthetic process Biological Process

KEGG gene cross-reference

ag:ABM68630

ath:AT1G32100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.581

Rank 1 · LXL04_026094 · OH-1004

Endoplasmic reticulum0.177

Rank 2 · LXL04_026094 · OH-1004

Nucleus0.147

Rank 3 · LXL04_026094 · OH-1004

Lysosome / Vacuole0.081

Rank 4 · LXL04_026094 · OH-1004

Cell membrane0.076

Rank 5 · LXL04_026094 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05368.20NmrA3-308 aa

PF01370.28Epimerase6-113 aa

PF13460.13NAD_binding_1010-160 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026094	`PF05368.20`	NmrA	3	308	5.4e-66	223.9
LXL04_026094	`PF01370.28`	Epimerase	6	113	4.1e-11	43.5
LXL04_026094	`PF13460.13`	NAD_binding_10	10	160	1.5e-14	55.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FVQ6`	Arabidopsis thaliana	Pinoresinol reductase 1	64.516%	Swiss-Prot	strong database homology

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