Gene Card
Gene overview
cDNA / CDS / Protein Sequences
3457 bp · TkA06G021650|TK1151|cDNA
CTAATATTCATCATCTACTTACCATTACTTTATCTCTGAGTTATATTTCTCTCCTTTTTTAGGATGGATCCTTGGGCGTCTCTGCTTATGATGCTGACAAAAACTGCATGCTTCTCTTTGTATCATCAAAAGCAACCCCTTACCAATCAGTTCCAACAAAAGTAATCAGTGTGTGTCCATTTATGACATTCACCAATAGACTTGGTCAAGATATATATCTAAAGCTTAGCAGTGAAGATCCCCCAAAATTACTGCGAGCA...
12672 bp · TkA06G021650|TK1151|CDS
ATGTTAGAGGATCAAGTAGCGAATTTGTTACAGAGGTACCTCGGCAACTATGTCCGTGGCCTCAGCAAAGAAGCTCTCAAAATCAGCGTCTGGCAGGGCGATGTAGAGTTAACAAATATGCAACTGAAGCCTGAGGCACTCAATGCGCTGAAGTTGCCTGTAAAGGTCAAGGCTGGGTTTCTTGGATCAGTGAAGCTCAAGGTTCCTTGGAGCAGGATTGGTCAAGAACCAGTTTTGGTGTACTTAGATCGTATATATTT...
Protein
Download Protein FASTA4223 aa · TkA06G021650|TK1151|PROTEIN
MLEDQVANLLQRYLGNYVRGLSKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGFLGSVKLKVPWSRIGQEPVLVYLDRIYLLAEPETQVEGHSEDAVQKTKKSRIHDMEMKMLESRQILTTEMNKSWLGSFINTIIGNLKLSISSIHIRYEDIESNPGHPFAAGMTLEKLSASTVDDSGKEAFVTGGALELLHKSVELERLAVYLDSDITPWHIKKPWEDLKPSEWDQVFSFGTKDGKPATSLAEKHTYLLQPV...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA06G021650 |
|---|---|
| TK1151 ID | TkA06G021650 |
| OH-1004 ID | LXL04_026198 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.800 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA06G021650 |
|---|---|
| Location | Chr06:5943941-5968712 (-) |
| Description | Similar to vps13A: Putative vacuolar protein sorting-associated protein 13A |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006623 protein targeting to vacuole Biological Process GO:0006869 lipid transport Biological Process GO:0007005 mitochondrion organization Biological Process GO:0045053 protein retention in Golgi apparatus Biological Process GO:0045324 late endosome to vacuole transport Biological Process GO:0120009 intermembrane lipid transfer Biological Process GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0005811 lipid droplet Cellular Component GO:0016020 membrane Cellular Component GO:0005543 phospholipid binding Molecular Function GO:0120014 phospholipid transfer activity Molecular Function |
| KEGG gene cross-reference | cthr:CTHT_0020450 ddi:DDB_G0274917 ddi:DDB_G0286725 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF12624VPS13_N1-674 aaPF16476DUF5053399-422 aaPF16476DUF5053446-460 aaPF25033VPS13_M608-652 aaPF00169PH795-903 aaPF25033VPS13_M1157-1278 aaPF12624VPS13_N1236-1277 aaPF25033VPS13_M1319-1694 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA06G021650 | PF12624 | VPS13_N | 1 | 674 | 1e-119 | 401.9 |
| TkA06G021650 | PF16476 | DUF5053 | 399 | 422 | 0.21 | 12.1 |
| TkA06G021650 | PF16476 | DUF5053 | 446 | 460 | 0.21 | 12.1 |
| TkA06G021650 | PF25033 | VPS13_M | 608 | 652 | 2e-18 | 66.6 |
| TkA06G021650 | PF00169 | PH | 795 | 903 | 7.2e-08 | 33.6 |
| TkA06G021650 | PF25033 | VPS13_M | 1157 | 1278 | 2e-18 | 66.6 |
| TkA06G021650 | PF12624 | VPS13_N | 1236 | 1277 | 1e-119 | 401.9 |
| TkA06G021650 | PF25033 | VPS13_M | 1319 | 1694 | 2e-18 | 66.6 |
| TkA06G021650 | PF06101 | Vps62 | 1973 | 2124 | 4.8e-34 | 118.3 |
| TkA06G021650 | PF06101 | Vps62 | 2196 | 2342 | 4.8e-34 | 118.3 |
| TkA06G021650 | PF25033 | VPS13_M | 2383 | 2482 | 2e-18 | 66.6 |
| TkA06G021650 | PF25036 | VPS13_VAB | 2786 | 3084 | 1.4e-20 | 74.0 |
| TkA06G021650 | PF00169 | PH | 2881 | 2926 | 7.2e-08 | 33.6 |
| TkA06G021650 | PF25036 | VPS13_VAB | 3188 | 3354 | 1.4e-20 | 74.0 |
| TkA06G021650 | PF25037 | VPS13_C | 3806 | 3913 | 1.6e-11 | 44.9 |
| TkA06G021650 | PF00169 | PH | 3936 | 3982 | 7.2e-08 | 33.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.