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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G020850
Reference: TK1151 Chr: Chr06 Coordinates: 5688376-5694370 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1582 bp · TkA06G020850|TK1151|cDNA

ATTGAAATTGTAGTTTTGTTATTTCAATTTTATACATAAGTTTCTTGACAAAACTAGACACCAATTATGCTCACTCTTCTTCTTTTGATATGTCTAGTTACTGGTAGCACAGGCAATATCGAAGTGGCACCACACCAGAATACTCATTGTTGTGTTGGTGAAAATAATGGTGCCATGAACTATTATTGTTGTAAACAAAATAGGTTTTATGATGCAGAAACATGTATTAGAGGTTGGTCTTCGTTCCAAGAATGTACAAA...

CDS

Download CDS FASTA

1884 bp · TkA06G020850|TK1151|CDS

ATGGCCAAAGAGCGTAGCGGATCACCAAAATATCCAGCAAGGAGGAATCATCTGTCGTGGATCTTAGCCGTGAGTGGACTCTGCCTTTTCTTCTACGTATTAGGAGCTTGGCAAAGAAGTATCATTCCTACCAACCACACCGAATTCGCCACAAGAGTTGGATGTGAAAACGCATCAAACATACCTTCTAATTCACCATCATCATCATCATCATCATCTGAGACCTTGGATTTTGAAAGCCATCATCAGTTAGTAACGGA...

Protein

Download Protein FASTA

627 aa · TkA06G020850|TK1151|PROTEIN

MAKERSGSPKYPARRNHLSWILAVSGLCLFFYVLGAWQRSIIPTNHTEFATRVGCENASNIPSNSPSSSSSSSETLDFESHHQLVTEDTQEIPEFPACSMNYSEYTPCQERDRGRKFDRDMLKYRERHCPSEDELLHCLIPAPPKYKLPFKWPKSRDYAWFNNIPHKELSIEKDVQNWIKVEGDRFRFPGGGTMFPRGADAYIDDINELIPLTNGTIRTAIDTGCGVASWGAYLLKRDIIAMSFAPKDTHEAQVWFALER...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA06G020850
TK1151 IDTkA06G020850
OH-1004 IDLXL04_011929
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)59.000
Protein coverage (%)TK1151 97.767 / OH-1004 95.046
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G020850
LocationChr06:5688376-5694370 (-)
DescriptionSimilar to At2g45750: Probable methyltransferase PMT16
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g33170 Probable methyltransferase PMT18. No verified direct reference in this release
At4g10440 Probable methyltransferase PMT17. No verified direct reference in this release
At2g45750 Probable methyltransferase PMT16. No verified direct reference in this release
At4g00750 Probable methyltransferase PMT15. No verified direct reference in this release
At1g26850 Probable methyltransferase PMT2. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011929 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0032259 methylation Biological Process
GO:0000139 Golgi membrane Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005768 endosome Cellular Component
GO:0005789 endoplasmic reticulum membrane Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005797 Golgi medial cisterna Cellular Component
GO:0005802 trans-Golgi network Cellular Component
GO:0005829 cytosol Cellular Component
GO:0008168 methyltransferase activity Molecular Function
KEGG gene cross-reference
ath:AT1G26850
ath:AT1G33170
ath:AT2G45750
ath:AT4G00750
ath:AT4G10440
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.757
Rank 1 · TkA06G020850 · TK1151
Cell membrane0.079
Rank 2 · TkA06G020850 · TK1151
Endoplasmic reticulum0.070
Rank 3 · TkA06G020850 · TK1151
Extracellular0.061
Rank 4 · TkA06G020850 · TK1151
Cytoplasm0.037
Rank 5 · TkA06G020850 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03141Methyltransf_29104-615 aa
PF13489Methyltransf_23202-319 aa
PF13847Methyltransf_31220-227 aa
PF13649Methyltransf_25221-312 aa
PF08241Methyltransf_11222-315 aa
PF08242Methyltransf_12222-313 aa
PF13847Methyltransf_31274-320 aa
PF20922Anamorsin_N277-319 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G020850PF03141Methyltransf_291046151e-226754.2
TkA06G020850PF13489Methyltransf_232023190.0004420.7
TkA06G020850PF13847Methyltransf_312202270.08313.4
TkA06G020850PF13649Methyltransf_252213122.9e-0731.8
TkA06G020850PF08241Methyltransf_112223151.3e-0732.8
TkA06G020850PF08242Methyltransf_122223130.04215.3
TkA06G020850PF13847Methyltransf_312743200.08313.4
TkA06G020850PF20922Anamorsin_N2773190.09813.1
TkA06G020850PF22223ATR1_N3523620.6310.6
TkA06G020850PF13649Methyltransf_255245702.9e-0731.8
TkA06G020850PF13489Methyltransf_235295960.0004420.7
TkA06G020850PF08242Methyltransf_125305710.04215.3
TkA06G020850PF13847Methyltransf_315345780.08313.4
TkA06G020850PF08241Methyltransf_115355741.3e-0732.8
TkA06G020850PF20922Anamorsin_N5565780.09813.1
TkA06G020850PF22223ATR1_N5675860.6310.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C884Arabidopsis thalianasp|Q9C884|PMTI_ARATH Probable methyltransferase PMT1866.700%Swiss-ProtHigh
Q9SZX8Arabidopsis thalianasp|Q9SZX8|PMTH_ARATH Probable methyltransferase PMT1767.400%Swiss-ProtHigh
O80844Arabidopsis thalianasp|O80844|PMTG_ARATH Probable methyltransferase PMT1655.800%Swiss-ProtHigh
Q9ZPH9Arabidopsis thalianasp|Q9ZPH9|PMTF_ARATH Probable methyltransferase PMT1554.300%Swiss-ProtHigh
B9DFI7Arabidopsis thalianasp|B9DFI7|PMT2_ARATH Probable methyltransferase PMT254.200%Swiss-ProtHigh

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