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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G456160
Reference: TK1151 Chr: Chr05 Coordinates: 114250088-114258936 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1605 bp · TkA05G456160|TK1151|cDNA

TGATCATCCAAAACCTCCAAACGTTTTGTCCTTTCTACAGGAGATATGAATAAGACACCGTCCGACGATGAACGATCAATTTATGGCGATGTCCTCCAGGCCATCCTCTCCTACGTCCCACTCGTCCACTTACTTCTCGCTTCTGGAGTCTCAAAGTCGTGGACGGCCGCCGTATCCTCCGCCCTTCGCATCTCCACCACCACCACCCCATGGCTAATCGTCAACACGCAGAGCTCTAGGTACCCGTACCCGACAACGAC...

CDS

Download CDS FASTA

1332 bp · TkA05G456160|TK1151|CDS

ATGAATAAGACACCGTCCGACGATGAACGATCAATTTATGGCGATGTCCTCCAGGCCATCCTCTCCTACGTCCCACTCGTCCACTTACTTCTCGCTTCTGGAGTCTCAAAGTCGTGGACGGCCGCCGTATCCTCCGCCCTTCGCATCTCCACCACCACCACCCCATGGCTAATCGTCAACACGCAGAGCTCTAGGTACCCGTACCCGACAACGACAAACGCCTACGACCCGGAGTCAAACATGTGGATCGAGATCCGACA...

Protein

Download Protein FASTA

443 aa · TkA05G456160|TK1151|PROTEIN

MNKTPSDDERSIYGDVLQAILSYVPLVHLLLASGVSKSWTAAVSSALRISTTTTPWLIVNTQSSRYPYPTTTNAYDPESNMWIEIRQPAIDYVSILQSSQSNLLYMLSPTKLSLSFDPLHLTWHHAAAPKVTRRDPVVAVVGRHVVVAGGAYNFEDDPLAVEVYDLQSQQWNKSDPMPEFFNGSASSLWLSVASGDSEIFIMEKSSGVTHSFNPDSNTWSGPYDLRPDYRVFNSVIGFSDDRLIVVGMLGDVEDVDGVKV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G456160
TK1151 IDTkA05G456160
OH-1004 IDLXL04_022282
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 83.747 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G456160
LocationChr05:114250088-114258936 (-)
DescriptionSimilar to At1g23390: F-box/kelch-repeat protein At1g23390
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g23390 F-box/kelch-repeat protein At1g23390. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022282 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000070 mitotic sister chromatid segregation Biological Process
GO:0006513 protein monoubiquitination Biological Process
GO:0007094 mitotic spindle assembly checkpoint signaling Biological Process
GO:0010507 negative regulation of autophagy Biological Process
GO:0030307 positive regulation of cell growth Biological Process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Biological Process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process
GO:0051301 cell division Biological Process
GO:0071233 cellular response to L-leucine Biological Process
GO:1904263 positive regulation of TORC1 signaling Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
KEGG gene cross-reference
ath:AT1G23390
ath:AT3G24760
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.479
Rank 1 · TkA05G456160 · TK1151
Cytoplasm0.428
Rank 2 · TkA05G456160 · TK1151
Cell membrane0.114
Rank 3 · TkA05G456160 · TK1151
Endoplasmic reticulum0.087
Rank 4 · TkA05G456160 · TK1151
Plastid0.056
Rank 5 · TkA05G456160 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box15-45 aa
PF12937F-box-like15-45 aa
PF12737Mating_C44-97 aa
PF24996NANM60-84 aa
PF07646Kelch_269-84 aa
PF13964Beta-prop_Calicin71-87 aa
PF25210Kelch_FKB9572-84 aa
PF24681Kelch_KLHDC2_KLHL20_DRC772-85 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G456160PF00646F-box15450.0009119.8
TkA05G456160PF12937F-box-like15450.003717.7
TkA05G456160PF12737Mating_C44970.1911.6
TkA05G456160PF24996NANM60840.2510.9
TkA05G456160PF07646Kelch_269843.3e-0730.7
TkA05G456160PF13964Beta-prop_Calicin71870.02614.2
TkA05G456160PF25210Kelch_FKB9572844.4e-0833.8
TkA05G456160PF24681Kelch_KLHDC2_KLHL20_DRC772850.002917.6
TkA05G456160PF01344Kelch_174850.0001222.2
TkA05G456160PF25210Kelch_FKB951142204.4e-0833.8
TkA05G456160PF01344Kelch_11161270.0001222.2
TkA05G456160PF24681Kelch_KLHDC2_KLHL20_DRC71162210.002917.6
TkA05G456160PF24996NANM1221740.2510.9
TkA05G456160PF07646Kelch_21331783.3e-0730.7
TkA05G456160PF01344Kelch_11331780.0001222.2
TkA05G456160PF13964Beta-prop_Calicin1381750.02614.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LDE3Arabidopsis thalianasp|Q9LDE3|FBK9_ARATH F-box/kelch-repeat protein At1g2339040.400%Swiss-ProtMedium

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