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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G410840
Reference: TK1151 Chr: Chr05 Coordinates: 102203493-102205057 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1062 bp · TkA05G410840|TK1151|cDNA

GTCTTTAATCCTTCTCTACCTTTAATCTTCTCTTCTGAGGATCACCAAAACAAATCCAACAAGAAAACATGATTGCCATTTTGCATTTGGCTGTAGGATTAATGGGAAATGCTGCTTCATTTCTACTTTATATTGCTCCCATGTGGACTTTTGCTAGGGTCATAAGGAGAAAGAGCACGGAAGAATTCTCATATGTGCCTTACACGATTACCTTGTTGAATTGTCTTTTCTATACTTGGTACGGTTTGCCCGTTGTAAGC...

CDS

Download CDS FASTA

777 bp · TkA05G410840|TK1151|CDS

ATGATTGCCATTTTGCATTTGGCTGTAGGATTAATGGGAAATGCTGCTTCATTTCTACTTTATATTGCTCCCATGTGGACTTTTGCTAGGGTCATAAGGAGAAAGAGCACGGAAGAATTCTCATATGTGCCTTACACGATTACCTTGTTGAATTGTCTTTTCTATACTTGGTACGGTTTGCCCGTTGTAAGCTATGGATGGGAGAACTTCCCCATGATTACCATTAATGGCATTGGTATCCTTTTTGAGCTCTCATTCAT...

Protein

Download Protein FASTA

258 aa · TkA05G410840|TK1151|PROTEIN

MIAILHLAVGLMGNAASFLLYIAPMWTFARVIRRKSTEEFSYVPYTITLLNCLFYTWYGLPVVSYGWENFPMITINGIGILFELSFIIIFIWFTSPKQKLKAVIMTTIVIIFFSTTALISTFLVHDHQARKRLVGSVGLIASVGMYASPLVVMKKVIETKSVEYMPFSLSLFSFVASALWLAYGLLGKDMLIAAPNLVGCPLGALQLALYCKYRNSVMEDPEEEWDVEKVDQKDSKQHLQIAVVTTEDHNIDGKMSQT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G410840
TK1151 IDTkA05G410840
OH-1004 IDLXL04_021612
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G410840
LocationChr05:102203493-102205057 (-)
DescriptionSimilar to SWEET3: Bidirectional sugar transporter SWEET3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g53190 Mediates both low-affinity uptake and efflux of sugar across the plasma membrane. No verified direct reference in this release
At1g21460 Mediates both low-affinity uptake and efflux of sugar across the plasma membrane. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0220700 Mediates both low-affinity uptake and efflux of sugar across the plasma membrane. No verified direct reference in this release
Os05g0214300 Mediates both low-affinity uptake and efflux of sugar across the plasma membrane. No verified direct reference in this release
UniProt: B8AYH1 Mediates transport of sugars across the plasma membrane. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021612 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0008643 carbohydrate transport Biological Process
GO:0051260 protein homooligomerization Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005789 endoplasmic reticulum membrane Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0051119 sugar transmembrane transporter activity Molecular Function
KEGG gene cross-reference
ath:AT1G21460
ath:AT5G53190
dosa:Os01g0220700
dosa:Os01g0881300
dosa:Os05g0214300
osa:4324648
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.697
Rank 1 · TkA05G410840 · TK1151
Endoplasmic reticulum0.116
Rank 2 · TkA05G410840 · TK1151
Cytoplasm0.102
Rank 3 · TkA05G410840 · TK1151
Lysosome / Vacuole0.099
Rank 4 · TkA05G410840 · TK1151
Golgi apparatus0.058
Rank 5 · TkA05G410840 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17178MASE54-50 aa
PF08733PalH8-124 aa
PF03083MtN3_slv9-97 aa
PF14150YesK22-68 aa
PF26453DUF813258-90 aa
PF17178MASE575-118 aa
PF14150YesK78-124 aa
PF17370DUF539281-89 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G410840PF17178MASE54506.17.2
TkA05G410840PF08733PalH81240.859.3
TkA05G410840PF03083MtN3_slv9972.7e-40137.0
TkA05G410840PF14150YesK22680.212.6
TkA05G410840PF26453DUF813258900.04814.7
TkA05G410840PF17178MASE5751186.17.2
TkA05G410840PF14150YesK781240.212.6
TkA05G410840PF17370DUF539281892.49.0
TkA05G410840PF17370DUF5392991652.49.0
TkA05G410840PF08733PalH1051790.859.3
TkA05G410840PF17178MASE51061846.17.2
TkA05G410840PF03083MtN3_slv1332152.7e-40137.0
TkA05G410840PF26453DUF81321331840.04814.7
TkA05G410840PF14150YesK1401840.212.6
TkA05G410840PF17370DUF53921592122.49.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q6NQN5Arabidopsis thalianasp|Q6NQN5|SWET3_ARATH Bidirectional sugar transporter SWEET361.100%Swiss-ProtHigh
Q8L9J7Arabidopsis thalianasp|Q8L9J7|SWET1_ARATH Bidirectional sugar transporter SWEET146.200%Swiss-ProtMedium
Q5NAZ9Oryza sativa subsp. japonicasp|Q5NAZ9|SWT3B_ORYSJ Bidirectional sugar transporter SWEET3b60.600%Swiss-ProtHigh
Q0DJY3Oryza sativa subsp. japonicasp|Q0DJY3|SWT3A_ORYSJ Bidirectional sugar transporter SWEET3a44.900%Swiss-ProtMedium
B8AYH1Oryza sativa subsp. indicasp|B8AYH1|SWT1B_ORYSI Bidirectional sugar transporter SWEET1b47.100%Swiss-ProtMedium

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