LXL04_021612 | RubberDandelionOmics

Gene overview

LXL04_021612

Reference: OH-1004 Chr: Chr04 Coordinates: 133543912-133545191 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

777 bp · LXL04_021612|LXL04_021612|OH1004|cDNA

ATGATTGCCATTTTGCATTTGGCTGTAGGATTAATGGGAAATGCTGCTTCATTTCTACTTTATATTGCTCCCATGTGGACTTTTGCTAGGGTCATAAGGAAAAAGAGCACGGAAGAATTCTCATATGTGCCTTATACGATTACCTTGTTGAATTGTCTTTTCTATACTTGGTACGGTTTGCCCGTTGTAAGCTATGGATGGGAGAACTTCCCCATGATTACCATTAATGGCATTGGTATCCTTTTTGAGCTCTcattcat...

CDS

Download CDS FASTA

777 bp · LXL04_021612|LXL04_021612|OH1004|CDS

ATGATTGCCATTTTGCATTTGGCTGTAGGATTAATGGGAAATGCTGCTTCATTTCTACTTTATATTGCTCCCATGTGGACTTTTGCTAGGGTCATAAGGAAAAAGAGCACGGAAGAATTCTCATATGTGCCTTATACGATTACCTTGTTGAATTGTCTTTTCTATACTTGGTACGGTTTGCCCGTTGTAAGCTATGGATGGGAGAACTTCCCCATGATTACCATTAATGGCATTGGTATCCTTTTTGAGCTCTCATTCAT...

Protein

Download Protein FASTA

258 aa · LXL04_021612|LXL04_021612|OH1004|PROTEIN

MIAILHLAVGLMGNAASFLLYIAPMWTFARVIRKKSTEEFSYVPYTITLLNCLFYTWYGLPVVSYGWENFPMITINGIGILFELSFIIIFIWFTSPKQKLKAVIMTTIVIIFFSTTALISTFLVHDHQARKRLVGSVGLIASVGMYASPLVVMKKVIETKSVEYMPFSLSLFSFVASALWLAYGLLGKDMLIAAPNLVGCPLGALQLALYCKYRNSVMEDPEEEWDVEKVDQKDSKQHLQIAVVTTEDHNIDGKMSQT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021612`
TK1151 ID	TkA05G410840
OH-1004 ID	LXL04_021612
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_021612

Location Chr04:133543912-133545191 (-)

Description Similar to SWEET3: Bidirectional sugar transporter SWEET3

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g53190`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release
`At1g21460`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0220700`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release
`Os05g0214300`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release
`Os01g0881300`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021612 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0008643 carbohydrate transport Biological Process

GO:0051260 protein homooligomerization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0051119 sugar transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G21460

ath:AT5G53190

dosa:Os01g0220700

dosa:Os01g0881300

dosa:Os05g0214300

osa:4324648

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.701

Rank 1 · LXL04_021612 · OH-1004

Endoplasmic reticulum0.116

Rank 2 · LXL04_021612 · OH-1004

Cytoplasm0.102

Rank 3 · LXL04_021612 · OH-1004

Lysosome / Vacuole0.097

Rank 4 · LXL04_021612 · OH-1004

Golgi apparatus0.058

Rank 5 · LXL04_021612 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03083.22MtN3_slv9-97 aa

PF03083.22MtN3_slv133-215 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021612	`PF03083.22`	MtN3_slv	9	97	3e-40	136.9
LXL04_021612	`PF03083.22`	MtN3_slv	133	215	3e-40	136.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q6NQN5`	Arabidopsis thaliana	Bidirectional sugar transporter SWEET3	55.645%	Swiss-Prot	strong database homology
`Q8L9J7`	Arabidopsis thaliana	Bidirectional sugar transporter SWEET1	43.548%	Swiss-Prot	moderate database homology
`Q5NAZ9`	Oryza sativa subsp. japonica	Bidirectional sugar transporter SWEET3b	55.378%	Swiss-Prot	strong database homology
`Q0DJY3`	Oryza sativa subsp. japonica	Bidirectional sugar transporter SWEET3a	46.614%	Swiss-Prot	moderate database homology
`Q8RZQ8`	Oryza sativa subsp. japonica	Bidirectional sugar transporter SWEET1a	46.226%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card