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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G398140
Reference: TK1151 Chr: Chr05 Coordinates: 98978981-98986121 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4610 bp · TkA05G398140|TK1151|cDNA

CTTGGAATGGGTGCATCTCTCAAGGTTCCGTACCTGCCAAAAACACCGATCCAACCCACCCTTAGACCCGAAAAGTAGCTTAAAACAAAAATCTCAAAACTCCGATCAAAACCACACTCTTGATGCTTCCACTTGAATTCAGTATCACCCCTGGAGTACGTTCATGTTGTTATGCTCAACTTTGAATGTATAGTATAGGAGATAGCGATTGACATCATTGCTGGTATCATTAATTGGTGAAGTTTTGGGGATTCAACTGT...

CDS

Download CDS FASTA

4005 bp · TkA05G398140|TK1151|CDS

ATGACTTCTCTGCAGCTGTTACAGTTGACGGAACGAGGCCGTAGCCTGCTTTCGTCAGGTCGCAGGAAAACTCTATTGCTGGCAACTGGCATCATAGTTGCAGGTGGGACTGCTGCATACATGCATTCACAGAGCAGGGTTAGAAGGCCAAGTGGCACTAGTCAACACAATGGATTAGGAGATGATAATGAAAGAGTGGGATTGGATAAGAGTGTTATTAAAAAAAGCAGACAAAAGAAAGGACTGAAATCACTCCAAGT...

Protein

Download Protein FASTA

1334 aa · TkA05G398140|TK1151|PROTEIN

MTSLQLLQLTERGRSLLSSGRRKTLLLATGIIVAGGTAAYMHSQSRVRRPSGTSQHNGLGDDNERVGLDKSVIKKSRQKKGLKSLQVLAAILLSHMGKLGAKDLLALLATVVLRTAVSNRLAKVQGFLFRAAFLRRVPTFVQLIIENIILCFVQSALYSTSKYITGTLSLRFRKILTKLIHAQYFQNMIYYKMSHVDGRITNPEQRIASDVPKFCSELSDLIQEDLTAVTDGLLYSWRLCSYASPKYIVWILAYVLGAGA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G398140
TK1151 IDTkA05G398140
OH-1004 IDLXL04_021466
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G398140
LocationChr05:98978981-98986121 (-)
DescriptionSimilar to ABCD1: ABC transporter D family member 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g39850 Contributes to the transport of fatty acids and their derivatives (acyl CoAs) across the peroxisomal membrane.
Ped3p is a peroxisomal ATP-binding cassette transporter that might supply substrates for fatty acid beta-oxidation.2002 · DOI: 10.1093/pcp/pcf023
Acetate non-utilizing mutants of Arabidopsis: evidence that organic acids influence carbohydrate perception in germinating seedlings.2004 · DOI: 10.1007/s00438-004-0985-9
The Arabidopsis ALDP protein homologue COMATOSE is instrumental in peroxisomal acetate metabolism.2007 · DOI: 10.1042/bj20070258
2,4-Dichlorophenoxybutyric acid-resistant mutants of Arabidopsis have defects in glyoxysomal fatty acid beta-oxidation.1998 · DOI: 10.1105/tpc.10.2.183

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021466 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000038 very long-chain fatty acid metabolic process Biological Process
GO:0006633 fatty acid biosynthetic process Biological Process
GO:0006635 fatty acid beta-oxidation Biological Process
GO:0006744 ubiquinone biosynthetic process Biological Process
GO:0006869 lipid transport Biological Process
GO:0007031 peroxisome organization Biological Process
GO:0009410 response to xenobiotic stimulus Biological Process
GO:0010030 positive regulation of seed germination Biological Process
GO:0015721 bile acid and bile salt transport Biological Process
GO:0015910 long-chain fatty acid import into peroxisome Biological Process
GO:0015916 fatty-acyl-CoA transport Biological Process
GO:0016042 lipid catabolic process Biological Process
KEGG gene cross-reference
ath:AT4G39850
mmu:19299
rno:25270
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Peroxisome0.470
Rank 1 · TkA05G398140 · TK1151
Mitochondrion0.458
Rank 2 · TkA05G398140 · TK1151
Cytoplasm0.074
Rank 3 · TkA05G398140 · TK1151
Nucleus0.047
Rank 4 · TkA05G398140 · TK1151
Endoplasmic reticulum0.046
Rank 5 · TkA05G398140 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06472ABC_membrane_288-356 aa
PF03193RsgA_GTPase434-489 aa
PF05673DUF815437-488 aa
PF01580FtsK_SpoIIIE454-489 aa
PF20030bpMoxR457-489 aa
PF20703nSTAND1458-497 aa
PF25201nSTAND6458-502 aa
PF25199nSTAND_NTPase5459-487 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G398140PF06472ABC_membrane_2883562e-170565.9
TkA05G398140PF03193RsgA_GTPase4344890.06213.8
TkA05G398140PF05673DUF8154374880.001518.4
TkA05G398140PF01580FtsK_SpoIIIE4544890.0116.0
TkA05G398140PF20030bpMoxR4574890.211.4
TkA05G398140PF20703nSTAND14584979.3e-0626.2
TkA05G398140PF25201nSTAND64585020.1912.5
TkA05G398140PF25199nSTAND_NTPase54594870.2811.7
TkA05G398140PF00005ABC_tran4606059.6e-37127.4
TkA05G398140PF13514AAA_274614900.002718.0
TkA05G398140PF12775AAA_74624860.01915.2
TkA05G398140PF13555AAA_294644869.5e-0935.6
TkA05G398140PF13175AAA_154644890.01415.6
TkA05G398140PF13191AAA_164664901.6e-0629.5
TkA05G398140PF00270DEAD4664860.02215.2
TkA05G398140PF20720nSTAND34664890.03514.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q94FB9Arabidopsis thalianasp|Q94FB9|AB1D_ARATH ABC transporter D family member 176.100%Swiss-ProtHigh

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