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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G389450
Reference: TK1151 Chr: Chr05 Coordinates: 96798956-96801159 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1866 bp · TkA05G389450|TK1151|cDNA

GAATTGGCATTGTTTATCGGCTGGGCTTGGCTCAGTTGCTTTAGCCGGCTTCGTACTTGGCTTCCGTTCCTAATTTTGGCTTTCCGTTCTGTAAACTCAGGGAACTATCTTTAAACATGCTACCGCTCTCGTCCTTTCCGTCTATCTCGCCTGTACTTTCACCATTTCCAATCGAAAAAGATTCTACGAGCAAAAGTCACTTTCAACATCAAGGTAACAAGTAACGACCCCTTTCCCTCCTTTTCTCACTCTGTCTCTCG...

CDS

Download CDS FASTA

1533 bp · TkA05G389450|TK1151|CDS

ATGCAAACCGTTTGTTTCAACTCAAATGTAACACTTGGTTCTAGACATATCTTATCTTTACCATTCAATCACACCTCCTACATGTTCGATGAAATGTCTGAAAGAAGCCCAATAATATCTTCATCGCGAAAGTGTTGTTGTCCTTGTTGTTGCTGCTATTCTGCTGCCAATATATCAATGTGTAATAGATTGATTGCAATAAGCCCTAGCTTTCGTCAATCGACTTTGTATCAATGGTCGCTTACTAAAACACTACTCTT...

Protein

Download Protein FASTA

510 aa · TkA05G389450|TK1151|PROTEIN

MQTVCFNSNVTLGSRHILSLPFNHTSYMFDEMSERSPIISSSRKCCCPCCCCYSAANISMCNRLIAISPSFRQSTLYQWSLTKTLLFHGTSSRGFYTVSSFTDRNYHHEKLSSFNEKRKQRAFGHKRKKQFLCNASDDYVNDVEVMLSLLTDEVNLDPKKIDKKQIICNNKEKKNICSGIVNKDPKCNNEQGKISEKKDIEKGYRNKSEKKLIEEVSSLNCEEISTEVSNTIKEMNKEKHQKTNHLNFTTTVSNEKSQVH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G389450
TK1151 IDTkA05G389450
OH-1004 IDLXL04_021419
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G389450
LocationChr05:96798956-96801159 (-)
DescriptionSimilar to TADA: tRNA(adenine(34)) deaminase, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g68720 Deaminates adenosines to inosines in tRNA-Arg(ACG).
Identification of the chloroplast adenosine-to-inosine tRNA editing enzyme.2009 · DOI: 10.1261/rna.1600609
Arabidopsis tRNA adenosine deaminase arginine edits the wobble nucleotide of chloroplast tRNAArg(ACG) and is essential for efficient chloroplast translation.2009 · DOI: 10.1105/tpc.109.066654

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021419 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002100 tRNA wobble adenosine to inosine editing Biological Process
GO:0010311 lateral root formation Biological Process
GO:0005634 nucleus Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0008251 tRNA-specific adenosine deaminase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0046872 metal ion binding Molecular Function
GO:0052717 tRNA-specific adenosine-34 deaminase activity Molecular Function
KEGG gene cross-reference
ath:AT1G68720
bsu:BSU00180
spa:M6_Spy0214
spg:SpyM3_0153
sps:SPs0158
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.784
Rank 1 · TkA05G389450 · TK1151
Mitochondrion0.165
Rank 2 · TkA05G389450 · TK1151
Nucleus0.071
Rank 3 · TkA05G389450 · TK1151
Cytoplasm0.055
Rank 4 · TkA05G389450 · TK1151
Cell membrane0.024
Rank 5 · TkA05G389450 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28483TAXIMIN16-55 aa
PF14439Bd3614-deam39-52 aa
PF00383dCMP_cyt_deam_145-65 aa
PF09930DUF216247-69 aa
PF18782APOBEC3119-136 aa
PF18772APOBEC2119-154 aa
PF18772APOBEC2204-304 aa
PF18782APOBEC3215-244 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G389450PF28483TAXIMIN16550.008817.1
TkA05G389450PF14439Bd3614-deam39524e-0627.5
TkA05G389450PF00383dCMP_cyt_deam_145657.8e-30103.5
TkA05G389450PF09930DUF216247690.1812.0
TkA05G389450PF18782APOBEC31191360.005617.5
TkA05G389450PF18772APOBEC21191540.008516.6
TkA05G389450PF18772APOBEC22043040.008516.6
TkA05G389450PF18782APOBEC32152440.005617.5
TkA05G389450PF00383dCMP_cyt_deam_13024007.8e-30103.5
TkA05G389450PF14437MafB19-deam3034033.9e-2795.5
TkA05G389450PF14439Bd3614-deam3263924e-0627.5
TkA05G389450PF18782APOBEC33453900.005617.5
TkA05G389450PF18772APOBEC23473890.008516.6
TkA05G389450PF09930DUF21623663900.1812.0
TkA05G389450PF28483TAXIMIN3773940.008817.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9S7I0Arabidopsis thalianasp|Q9S7I0|TADA_ARATH tRNA(adenine(34)) deaminase, chloroplastic70.800%Swiss-ProtLow

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