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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G378540
Reference: TK1151 Chr: Chr05 Coordinates: 94041084-94044008 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2124 bp · TkA05G378540|TK1151|cDNA

TTTAGAAGAAAAATGAAAGAAAACATTTGTAAGAAAAGTTCCCTTACTCTCAACGCTGCAATAAAAAGCAAAGCTCAGTTCTCTCTATGTCCTGAGACGACTCGGTTCTCAGATTGTCAAACCCTAGTATTCTCCCTCTCTCCCTAACTTTTCTCCGCCATGGCTTCACGGAGGCTAGCTGCCTCCATCCTCCGCTCCACCCTCCACCGATCATCATCCAGATCTCCATTTACTCACTCCAGCAGAGCCGCACGCGCACG...

CDS

Download CDS FASTA

1680 bp · TkA05G378540|TK1151|CDS

ATGGCTTCACGGAGGCTAGCTGCCTCCATCCTCCGCTCCACCCTCCACCGATCATCATCCAGATCTCCATTTACTCACTCCAGCAGAGCCGCACGCGCACGATCTCAATCCAACCCTTCTCCTACCGGCTACTTTCTTAACCGTGTAGTCAACTACGCTACTTCTGCTGCCGCCGCTCCGACCAAGCAAGCTCCTACAACCCCTGGTGAAGGATCTAACTACGGAAAGATCACTGATGAGTTCACCGGAGCTGGCGCGAT...

Protein

Download Protein FASTA

559 aa · TkA05G378540|TK1151|PROTEIN

MASRRLAASILRSTLHRSSSRSPFTHSSRAARARSQSNPSPTGYFLNRVVNYATSAAAAPTKQAPTTPGEGSNYGKITDEFTGAGAIGQVCQVIGAVVDVRFSEGLPPILTALEVLDNSIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVIGEPIDHRGDIKTDHYLPIHREAPSFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA05G378540
TK1151 IDTkA05G378540
OH-1004 IDLXL04_021304
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G378540
LocationChr05:94041084-94044008 (+)
DescriptionSimilar to ATPB: ATP synthase subunit beta, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g08670 Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0553000 Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021304 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0015986 proton motive force-driven ATP synthesis Biological Process
GO:0042776 proton motive force-driven mitochondrial ATP synthesis Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005743 mitochondrial inner membrane Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0045259 proton-transporting ATP synthase complex Cellular Component
GO:0005507 copper ion binding Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0016887 ATP hydrolysis activity Molecular Function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism Molecular Function
KEGG gene cross-reference
ath:AT5G08680
dosa:Os05g0553000
zma:542267
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.916
Rank 1 · TkA05G378540 · TK1151
Plastid0.048
Rank 2 · TkA05G378540 · TK1151
Cytoplasm0.046
Rank 3 · TkA05G378540 · TK1151
Nucleus0.033
Rank 4 · TkA05G378540 · TK1151
Cell membrane0.016
Rank 5 · TkA05G378540 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11421Synthase_beta1-48 aa
PF24883NPHP3_N4-34 aa
PF02874ATP-synt_ab_N90-156 aa
PF06745ATPase212-282 aa
PF00006ATP-synt_ab213-434 aa
PF03193RsgA_GTPase216-275 aa
PF13191AAA_16218-351 aa
PF00005ABC_tran224-255 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G378540PF11421Synthase_beta1481.7e-0629.3
TkA05G378540PF24883NPHP3_N4340.3411.8
TkA05G378540PF02874ATP-synt_ab_N901561.9e-1764.2
TkA05G378540PF06745ATPase2122820.04713.8
TkA05G378540PF00006ATP-synt_ab2134341e-68231.9
TkA05G378540PF03193RsgA_GTPase2162750.2212.0
TkA05G378540PF13191AAA_162183510.01716.3
TkA05G378540PF00005ABC_tran2242550.2812.5
TkA05G378540PF00931NB-ARC2272640.001119.2
TkA05G378540PF13245AAA_192292560.1712.8
TkA05G378540PF25201nSTAND62292790.2412.2
TkA05G378540PF00004AAA2313440.1113.6
TkA05G378540PF24883NPHP3_N2312920.3411.8
TkA05G378540PF22919ATP-synt_VA_C4425151.5e-1557.7
TkA05G378540PF18269T3SS_ATPase_C4444980.1712.5
TkA05G378540PF00004AAA4494790.1113.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P83483Arabidopsis thalianasp|P83483|ATPBM_ARATH ATP synthase subunit beta-1, mitochondrial82.300%Swiss-ProtHigh
Q01859Oryza sativa subsp. japonicasp|Q01859|ATPBM_ORYSJ ATP synthase subunit beta, mitochondrial92.500%Swiss-ProtHigh

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