LXL04_021304 | RubberDandelionOmics

Gene overview

LXL04_021304

Reference: OH-1004 Chr: Chr04 Coordinates: 126930632-126933144 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1680 bp · LXL04_021304|LXL04_021304|OH1004|cDNA

ATGGCTTCACGGAGGCTAGCTGCCTCCATCCTCCGCTCCACCCTCCACCGATCATCATCCAGATCTCCATTTACTCACTCCAGCAGAGCCGCACGCGCACGATCTCAATCCAACCCTTCTCCTACCGGCTACTTTCTTAACCGTGTAGTCAACTACGCTACTTCTGCTGCCGCCGCTCCGACCAAGCAAGCTCCTACAACCCCTGGTGAAGGATCTAACTACGGAAAGATCACTGATGAGTTCACCGGAGCTGGCGCGAT...

CDS

Download CDS FASTA

1680 bp · LXL04_021304|LXL04_021304|OH1004|CDS

ATGGCTTCACGGAGGCTAGCTGCCTCCATCCTCCGCTCCACCCTCCACCGATCATCATCCAGATCTCCATTTACTCACTCCAGCAGAGCCGCACGCGCACGATCTCAATCCAACCCTTCTCCTACCGGCTACTTTCTTAACCGTGTAGTCAACTACGCTACTTCTGCTGCCGCCGCTCCGACCAAGCAAGCTCCTACAACCCCTGGTGAAGGATCTAACTACGGAAAGATCACTGATGAGTTCACCGGAGCTGGCGCGAT...

Protein

Download Protein FASTA

559 aa · LXL04_021304|LXL04_021304|OH1004|PROTEIN

MASRRLAASILRSTLHRSSSRSPFTHSSRAARARSQSNPSPTGYFLNRVVNYATSAAAAPTKQAPTTPGEGSNYGKITDEFTGAGAIGQVCQVIGAVVDVRFSEGLPPILTALEVLDNSIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVIGEPIDHRGDIKTDHYLPIHREAPSFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021304`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_021304

Location Chr04:126930632-126933144 (+)

Description Similar to ATPB: ATP synthase subunit beta, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g08680`	Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0553000`	Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021304 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0015986 proton motive force-driven ATP synthesis Biological Process

GO:0042776 proton motive force-driven mitochondrial ATP synthesis Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0045259 proton-transporting ATP synthase complex Cellular Component

GO:0005507 copper ion binding Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0016887 ATP hydrolysis activity Molecular Function

GO:0046933 proton-transporting ATP synthase activity, rotational mechanism Molecular Function

KEGG gene cross-reference

ath:AT5G08680

dosa:Os05g0553000

zma:542267

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.916

Rank 1 · LXL04_021304 · OH-1004

Plastid0.048

Rank 2 · LXL04_021304 · OH-1004

Cytoplasm0.046

Rank 3 · LXL04_021304 · OH-1004

Nucleus0.033

Rank 4 · LXL04_021304 · OH-1004

Cell membrane0.016

Rank 5 · LXL04_021304 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11421.14Synthase_beta1-48 aa

PF02874.30ATP-synt_ab_N90-156 aa

PF00006.32ATP-synt_ab213-434 aa

PF22919.2ATP-synt_VA_C442-515 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021304	`PF11421.14`	Synthase_beta	1	48	1.7e-06	29.3
LXL04_021304	`PF02874.30`	ATP-synt_ab_N	90	156	1.9e-17	64.2
LXL04_021304	`PF00006.32`	ATP-synt_ab	213	434	1e-68	231.9
LXL04_021304	`PF22919.2`	ATP-synt_VA_C	442	515	1.5e-15	57.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9C5A9`	Arabidopsis thaliana	ATP synthase subunit beta-3, mitochondrial	85.797%	Swiss-Prot	strong database homology
`Q01859`	Oryza sativa subsp. japonica	ATP synthase subunit beta, mitochondrial	87.835%	Swiss-Prot	strong database homology

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