RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G325770
Reference: TK1151 Chr: Chr05 Coordinates: 80262970-80265263 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1444 bp · TkA05G325770|TK1151|cDNA

CAGCAGTCTAAGCACACACGTCCTTTTCAAAGCCTGCAAATATTCCCTCTTTCTTTCTGTTACTCCTCTGTTTTGATCGGTTCCAACAGTCCATTTCCACAATGTACGATAATTTGCAGGTTAAACACTGAAACAACGATCTAAAATGAAGGTTTTATTGAAGACATTGGAGTCCCTAAGACCCCTTGCAGTAACCAAGGCATGGGACTATTGCGTTGTTTGGAAGTTCGACGATGATCCTTCAGGGTATATCGAGTGGA...

CDS

Download CDS FASTA

654 bp · TkA05G325770|TK1151|CDS

ATGAATCCATATCATTACCATCAAATTGTTCCTAAACTAGCGCATGGTAAAGAAATCATCAAGACTGAGCACAAGAACAAGATATGTAAAGAAGAATACAATTCAAAAAATCTTGTAACCGAAAGAAACCGAAGAAAGCGAATCAAAGATGGTCTCTACACTTTACGCGCTCTAGTCCCTCGAATCTCCAAGATGGATAAAGCTTCGATAGTTGGAGATGCGGTTGAGTACATAAAAGAGTTGGAAAAAAATGTTAAACA...

Protein

Download Protein FASTA

217 aa · TkA05G325770|TK1151|PROTEIN

MNPYHYHQIVPKLAHGKEIIKTEHKNKICKEEYNSKNLVTERNRRKRIKDGLYTLRALVPRISKMDKASIVGDAVEYIKELEKNVKQLQQELKELEQQDSKANDADVEVCKPKRAYSQTYSKPNSRVSNVSDLKKTEVQVEVHEIGARNFILKLIATINVMGFVRIMEIIDSLGVQVIDINVTTCNGCVLNVLNLEAKDKEDVAKSLKELLLTSWSS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA05G325770
TK1151 IDTkA05G325770
OH-1004 IDLXL04_020884
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)93.500
Protein coverage (%)TK1151 100.000 / OH-1004 55.703
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G325770
LocationChr05:80262970-80265263 (+)
DescriptionSimilar to BHLH90: Transcription factor bHLH90
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g10610 Transcription factor bHLH90. No verified direct reference in this release
At2g16910 Transcription factor. No verified direct reference in this release
At5g57150 Transcription factor bHLH35. No verified direct reference in this release
At1g12860 Mediates stomatal differentiation in the epidermis probably by controlling successive roles of SPCH, MUTE, and FAMA.
SCREAM/ICE1 and SCREAM2 specify three cell-state transitional steps leading to arabidopsis stomatal differentiation.2008 · DOI: 10.1105/tpc.108.060848

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0120500 Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_020884 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0009555 pollen development Biological Process
GO:0048653 anther development Biological Process
GO:0048654 anther morphogenesis Biological Process
GO:0048657 anther wall tapetum cell differentiation Biological Process
GO:0048658 anther wall tapetum development Biological Process
GO:0005634 nucleus Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding Molecular Function
GO:0003677 DNA binding Molecular Function
GO:0003682 chromatin binding Molecular Function
KEGG gene cross-reference
ath:AT1G10610
ath:AT2G16910
dosa:Os02g0120500
osa:4328113
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.931
Rank 1 · TkA05G325770 · TK1151
Cytoplasm0.151
Rank 2 · TkA05G325770 · TK1151
Cell membrane0.029
Rank 3 · TkA05G325770 · TK1151
Endoplasmic reticulum0.017
Rank 4 · TkA05G325770 · TK1151
Plastid0.010
Rank 5 · TkA05G325770 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03462PCRF12-97 aa
PF26768YtrI_N14-39 aa
PF26585STX17_N24-55 aa
PF05549Allexi_40kDa31-122 aa
PF00010HLH39-82 aa
PF23177bHLH_IRO339-98 aa
PF23173bHLH_SAC5141-84 aa
PF26585STX17_N53-108 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G325770PF03462PCRF12970.969.9
TkA05G325770PF26768YtrI_N14390.2711.8
TkA05G325770PF26585STX17_N24550.2912.0
TkA05G325770PF05549Allexi_40kDa311220.2911.3
TkA05G325770PF00010HLH39826.9e-1245.7
TkA05G325770PF23177bHLH_IRO339987.3e-0627.0
TkA05G325770PF23173bHLH_SAC5141840.0005520.5
TkA05G325770PF26585STX17_N531080.2912.0
TkA05G325770PF09228Prok-TraM541330.1313.6
TkA05G325770PF13739PdaC601240.4712.3
TkA05G325770PF03310Cauli_DNA-bind681293.48.6
TkA05G325770PF08336P4Ha_N751150.02215.3
TkA05G325770PF12097DUF3573751530.09112.3
TkA05G325770PF26768YtrI_N761020.2711.8
TkA05G325770PF10975DUF2802781020.08113.8
TkA05G325770PF00010HLH881076.9e-1245.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q0WNR2Arabidopsis thalianasp|Q0WNR2|BH090_ARATH Transcription factor bHLH9035.200%Swiss-ProtMedium
Q9ZVX2Arabidopsis thalianasp|Q9ZVX2|AMS_ARATH Transcription factor ABORTED MICROSPORES39.900%Swiss-ProtMedium
Q2HIV9Arabidopsis thalianasp|Q2HIV9|BH035_ARATH Transcription factor bHLH3530.000%Swiss-ProtMedium
Q9LPW3Arabidopsis thalianasp|Q9LPW3|SCRM2_ARATH Transcription factor SCREAM263.800%Swiss-ProtLow
Q6YUS3Oryza sativa subsp. japonicasp|Q6YUS3|TDR_ORYSJ Transcription factor TDR28.300%Swiss-ProtLow

JBrowse

View in Genome Browser