TkA05G006760 | RubberDandelionOmics

Gene overview

TkA05G006760

Reference: TK1151 Chr: Chr05 Coordinates: 1995125-2002225 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2980 bp · TkA05G006760|TK1151|cDNA

AAAGAATTACGAAAGAGCCCACACAAAACCTGAAGAGGGAGAAGAGGAGCCCATTTCTGATTAACAAGTGTGAAGGTACGCGTAAGAGGCCCCATTAAATCTAAGGGCGAATCCGCACCAGCACATAGCCATCGATAAACACAACCATGGTGTCATAGAGACGATGCTATCCTACGCCCATATGTACCTTACACCGTCTTTCCATGCGCCACACAGACACACACACATCGACCGCAAACCCCCTTCGACTTACCGACCTC...

CDS

Download CDS FASTA

2124 bp · TkA05G006760|TK1151|CDS

ATGCCGGATTTGAGACGTGGAGTTCGCCAGGCCAAAAAAGCTAATAATAATAATAATAATAATAATAATAATAACAACAATACCAATAATGACAATAATGCCCCTGTTGTAGCTCCAACACCGCGACGTGGGACCCGGCGAGGGAAAGCTCAGGCAGCACCTGCTGGTCAAGTGGCCCCCGCATACCCGTACCCGATGCCTAGGCCAGCTGGCAGAGGACGTGGGGCCCGACAAGCAGAGGATAAAAACCCTGAACTGTT...

Protein

Download Protein FASTA

707 aa · TkA05G006760|TK1151|PROTEIN

MPDLRRGVRQAKKANNNNNNNNNNNNNTNNDNNAPVVAPTPRRGTRRGKAQAAPAGQVAPAYPYPMPRPAGRGRGARQAEDKNPELFGGGVGVGRGAHLNLDVGVCNNNNPLVVGKSAEKLAADAEDEGSTSPLPERVQVGNSPAYKLERKLGKGGFGQVYVGRRVSGGSGNSGPDALEVALKLEHRNGKGCSYGPPYEWQVYSTLNGCYGVPMVHHKGRQGDYYILVMDKLGPSLWDVWNSSNQILSEEMVACIAVEAL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G006760`
TK1151 ID	TkA05G006760
OH-1004 ID	LXL04_018972
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	99.700
Protein coverage (%)	TK1151 86.846 / OH-1004 85.139 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G006760

Location Chr05:1995125-2002225 (-)

Description Similar to HD16: Casein kinase 1-like protein HD16

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g28540`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.	Arabidopsis casein kinase 1-like 6 contains a microtubule-binding domain and affects the organization of cortical microtubules,2008 · DOI: 10.1104/pp.108.129346 Versatile casein kinase 1: multiple locations and functions.2009 · DOI: 10.1104/pp.108.129346
`At1g03930`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0793500`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.	Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response.2013 · DOI: 10.1111/tpj.12268

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018972 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0006897 endocytosis Biological Process

GO:0007165 signal transduction Biological Process

GO:0009740 gibberellic acid mediated signaling pathway Biological Process

GO:0009908 flower development Biological Process

GO:0010476 gibberellin mediated signaling pathway Biological Process

GO:0016055 Wnt signaling pathway Biological Process

GO:0018105 peptidyl-serine phosphorylation Biological Process

GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process Biological Process

GO:0045104 intermediate filament cytoskeleton organization Biological Process

GO:0048586 regulation of long-day photoperiodism, flowering Biological Process

GO:0051301 cell division Biological Process

KEGG gene cross-reference

bta:282684

cel:CELE_C03C10.1

dosa:Os03g0793500

ocu:100009227

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.457

Rank 1 · TkA05G006760 · TK1151

Nucleus0.394

Rank 2 · TkA05G006760 · TK1151

Cell membrane0.134

Rank 3 · TkA05G006760 · TK1151

Endoplasmic reticulum0.076

Rank 4 · TkA05G006760 · TK1151

Extracellular0.062

Rank 5 · TkA05G006760 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase146-378 aa

PF07714PK_Tyr_Ser-Thr147-309 aa

PF03109ABC1233-306 aa

PF17667Pkinase_fungal249-355 aa

PF06293Kdo259-300 aa

PF19974TCAD9259-298 aa

PF19974TCAD9314-350 aa

PF24289DUF7477440-707 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G006760	`PF00069`	Pkinase	146	378	1.9e-16	61.0
TkA05G006760	`PF07714`	PK_Tyr_Ser-Thr	147	309	2.5e-05	24.5
TkA05G006760	`PF03109`	ABC1	233	306	0.0076	16.2
TkA05G006760	`PF17667`	Pkinase_fungal	249	355	4.8e-07	29.6
TkA05G006760	`PF06293`	Kdo	259	300	0.0066	16.6
TkA05G006760	`PF19974`	TCAD9	259	298	0.25	11.2
TkA05G006760	`PF19974`	TCAD9	314	350	0.25	11.2
TkA05G006760	`PF24289`	DUF7477	440	707	3.3e-156	519.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LPJ1`	Arabidopsis thaliana	sp\|Q8LPJ1\|CKL6_ARATH Casein kinase 1-like protein 6	41.400%	Swiss-Prot	Low
`Q9ZWB3`	Arabidopsis thaliana	sp\|Q9ZWB3\|CKL9_ARATH Casein kinase 1-like protein 9	41.000%	Swiss-Prot	Low
`Q852L0`	Oryza sativa subsp. japonica	sp\|Q852L0\|HD16N_ORYSJ Casein kinase 1-like protein HD16	74.900%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card