LXL04_018972 | RubberDandelionOmics

Gene overview

LXL04_018972

Reference: OH-1004 Chr: Chr04 Coordinates: 20798164-20804748 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2470 bp · LXL04_018972|LXL04_018972|OH1004|cDNA

GATTAACAAGTGTGAAGGTACGCGTAAGAGGCCCCATTAAATCTAAGGGCGAATCCGCACCAGCACATAGCCATCGATAAACACAACCATGGTGTCATAGAGACGATGCTATCCTACGCCCATATGTACCTTACACCGTCTTTCCATGCGCCACACAGACACACACACATCGACCGCAAACCCCCTTCGACTTACCGACCTCCTCTCTCCATGAATTTTACAAATCCATACATCTCTTTGATCGAGATTTCAGCCTCTTC...

CDS

Download CDS FASTA

2163 bp · LXL04_018972|LXL04_018972|OH1004|CDS

TTGTTTCCCCAAAGGGTTTATAAGCTATATCATTCTTGTTGGGGTTGGAGGATATTTATTTGTGCATGGAAGAAGATGCCGGATTTGAGACGTGGAGTTCGCCAGGCCAAAAAAGCTAATAATAATAATAATAATAATAATAATAACAACAATACCAATAATGACAATAATGCCCCTGTTGTAGCTCCAACACCGCGACGTGGGACCCGGCGAGGGAAAGCTCAGGCAGCACCTGCTGGTCAAGTGGCCCCCGCATACCC...

Protein

Download Protein FASTA

720 aa · LXL04_018972|LXL04_018972|OH1004|PROTEIN

MFPQRVYKLYHSCWGWRIFICAWKKMPDLRRGVRQAKKANNNNNNNNNNNNTNNDNNAPVVAPTPRRGTRRGKAQAAPAGQVAPAYPYPMPRPAGRGRGARQAEDKNPELFGGGVGVGRGAHLNLDVGVCNNNNPLVVGKSAEKLAADAEDEGSTSPLPERVQVGNSPAYKLERKLGKGGFGQVYVGRRVSGGSGNSGPDALEVALKLEHRNGKGCSYGPPYEWQVYSTLNGCYGVPMVHHKGRQGDYYILVMDKLGPSL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018972`
TK1151 ID	TkA05G006760
OH-1004 ID	LXL04_018972
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	99.700
Protein coverage (%)	TK1151 86.846 / OH-1004 85.139 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_018972

Location Chr04:20798164-20804748 (-)

Description Similar to HD16: Casein kinase 1-like protein HD16

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0793500`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.	Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response.2013 · DOI: 10.1111/tpj.12268

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018972 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0006897 endocytosis Biological Process

GO:0007165 signal transduction Biological Process

GO:0009740 gibberellic acid mediated signaling pathway Biological Process

GO:0009908 flower development Biological Process

GO:0010476 gibberellin mediated signaling pathway Biological Process

GO:0016055 Wnt signaling pathway Biological Process

GO:0018105 peptidyl-serine phosphorylation Biological Process

GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process Biological Process

GO:0045104 intermediate filament cytoskeleton organization Biological Process

GO:0048586 regulation of long-day photoperiodism, flowering Biological Process

GO:0051301 cell division Biological Process

KEGG gene cross-reference

bta:282684

cel:CELE_C03C10.1

dosa:Os03g0793500

ocu:100009227

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.455

Rank 1 · LXL04_018972 · OH-1004

Nucleus0.376

Rank 2 · LXL04_018972 · OH-1004

Cell membrane0.123

Rank 3 · LXL04_018972 · OH-1004

Mitochondrion0.087

Rank 4 · LXL04_018972 · OH-1004

Endoplasmic reticulum0.085

Rank 5 · LXL04_018972 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase170-402 aa

PF17667.8Pkinase_fungal273-379 aa

PF24289.2DUF7477464-670 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018972	`PF00069.32`	Pkinase	170	402	2e-16	60.9
LXL04_018972	`PF17667.8`	Pkinase_fungal	273	379	5e-07	29.5
LXL04_018972	`PF24289.2`	DUF7477	464	670	3.7e-119	397.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q852L0`	Oryza sativa subsp. japonica	Casein kinase 1-like protein HD16	68.252%	Swiss-Prot	strong database homology

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