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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G005070
Reference: TK1151 Chr: Chr05 Coordinates: 1491303-1497259 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3113 bp · TkA05G005070|TK1151|cDNA

TTTACCTATTCAACCCATCGACGCCTTATTAACTTTTCAACATCTCCCGGTTACTCCTCCTTATCTGTCGATCTGCCCCTCACCATTACTCCCCAGTCCCCTCGTCGCCATAACGCCTCTCCCATCGATTTGGACCAAGCTGTCGATTTTGCTCCCAACCCTAATTCTTCTTCGTTCACATTCACAGTTAGGGTTTACCCCTGTCGTCAAATTAACGACTTTAAGGTATCTCTCTCTCTTCATATCTTAGAGTTCTTTAG...

CDS

Download CDS FASTA

2253 bp · TkA05G005070|TK1151|CDS

ATGGCGGTAGACGATGTCCCGTTGGATGATAAGGTAAAGAGAACGAGAGATCTGCTATCGAGTTTCTACTCACAGGATGCTGCTCAGACTTCTGCTCCCGCCAATACTACATCAAGATTCGCAACTCTTGACACTATCAACACCACATCCTTCGATGCCGATCAGTACATGAATCTTCTTGTACAAAAGTCAAATCTGGAGGGCCTCCTTCAGAGACACGTTGAAATGGCTGCTGAAATCAAGAATCTTGACACTGACTT...

Protein

Download Protein FASTA

750 aa · TkA05G005070|TK1151|PROTEIN

MAVDDVPLDDKVKRTRDLLSSFYSQDAAQTSAPANTTSRFATLDTINTTSFDADQYMNLLVQKSNLEGLLQRHVEMAAEIKNLDTDLQMLVYENYNKFISATDTIKRMKNNIVGMEVNMEQLLEKIMSVQSRSDGVNTLLFEKREHIEKLHRTRNLLRKVQFIYDLPTTLGKCIKSEAYSDAVRFYTGAMPIFKAYGDSSFQDCKKASEEVISVIINKLQEKVSSDSESIQARAEAVMLLKQLDFPVESLKSKLLENLQQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G005070
TK1151 IDTkA05G005070
OH-1004 IDLXL04_018944
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)77.700
Protein coverage (%)TK1151 87.600 / OH-1004 47.937
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G005070
LocationChr05:1491303-1497259 (-)
DescriptionSimilar to MCM7: DNA replication licensing factor MCM7
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g02030 Acts as a component of the GARP complex that is involved in retrograde transport from early and late endosomes to the trans-Golgi network (TGN).
Arabidopsis UNHINGED encodes a VPS51 homolog and reveals a role for the GARP complex in leaf shape and vein patterning.2014 · DOI: 10.1242/dev.099333

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018944 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000727 double-strand break repair via break-induced replication Biological Process
GO:0006270 DNA replication initiation Biological Process
GO:0006271 DNA strand elongation involved in DNA replication Biological Process
GO:0006279 premeiotic DNA replication Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0009555 pollen development Biological Process
GO:0010182 sugar mediated signaling pathway Biological Process
GO:0030174 regulation of DNA-templated DNA replication initiation Biological Process
GO:0044786 cell cycle DNA replication Biological Process
GO:0090329 regulation of DNA-templated DNA replication Biological Process
GO:1902975 mitotic DNA replication initiation Biological Process
GO:0000347 THO complex Cellular Component
KEGG gene cross-reference
ath:AT4G02060
dosa:Os12g0560700
spo:2540630
xtr:407945
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.538
Rank 1 · TkA05G005070 · TK1151
Cytoplasm0.514
Rank 2 · TkA05G005070 · TK1151
Endoplasmic reticulum0.126
Rank 3 · TkA05G005070 · TK1151
Nucleus0.101
Rank 4 · TkA05G005070 · TK1151
Cell membrane0.089
Rank 5 · TkA05G005070 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF15469Sec546-259 aa
PF08700VPS51_Exo84_N47-131 aa
PF10392COG5_N49-164 aa
PF06148COG2_N49-113 aa
PF04124Dor163-343 aa
PF20651EXOC6_Sec15_N78-184 aa
PF15469Sec5198-327 aa
PF20651EXOC6_Sec15_N212-251 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G005070PF15469Sec5462592.9e-1556.2
TkA05G005070PF08700VPS51_Exo84_N471314.2e-2278.7
TkA05G005070PF10392COG5_N491640.001519.5
TkA05G005070PF06148COG2_N491130.01216.4
TkA05G005070PF04124Dor1633431.1e-0938.4
TkA05G005070PF20651EXOC6_Sec15_N781840.0002921.5
TkA05G005070PF15469Sec51983272.9e-1556.2
TkA05G005070PF20651EXOC6_Sec15_N2122510.0002921.5
TkA05G005070PF10392COG5_N2152370.001519.5
TkA05G005070PF27202Flk_N3083300.3611.8
TkA05G005070PF15469Sec55205912.9e-1556.2
TkA05G005070PF04124Dor16166721.1e-0938.4
TkA05G005070PF10392COG5_N6356430.001519.5
TkA05G005070PF06148COG2_N6506750.01216.4
TkA05G005070PF15469Sec56567052.9e-1556.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q0WQ75Arabidopsis thalianasp|Q0WQ75|VPS51_ARATH Vacuolar protein sorting-associated protein 51 homolog61.300%Swiss-ProtHigh

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